|
| Status |
Public on Jul 10, 2018 |
| Title |
Muscle_Baseline_02 |
| Sample type |
SRA |
| |
|
| Source name |
vastus lateralis, baseline
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: Male
age: Young
exercise: Baseline
time: Pre Exercise
|
| Treatment protocol |
Acute aerobic and resistance exercise
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TRI Reagent followed by Clontech’s SMARTer Universal Low Input RNA kit
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Gene expression baseline, prior to acute exercise
|
| Data processing |
Illumina BCL2fastq
Sequencing alignment using STAR
HTSeq-count
DESeq for normalization
Genome_build: hg19
Supplementary_files_format_and_content: tab-deliminted text files counts table normalized with DESeq2
|
| |
|
| Submission date |
Dec 11, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Jared M Dickinson |
| E-mail(s) |
jared.dickinson@asu.edu
|
| Organization name |
Arizona State University
|
| Street address |
425 N 5th St
|
| City |
Phoenix |
| ZIP/Postal code |
85004 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE107934 |
Transcriptome response of human skeletal muscle to divergent exercise stimuli |
|
| Relations |
| BioSample |
SAMN08160731 |
| SRA |
SRX3461874 |
