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Sample GSM2884

Query DataSets for GSM2884

Status

Public on Dec 06, 2002

Title

H9RGV00110701

Sample type

RNA

Source name

amygdala

Organism

Extracted molecule

total RNA

Description

Large-scale analysis of the human transcriptome.
Brain, amygdala
Source: Clontech, http://www.clontech.com/archive/OCT01UPD/pdf/PremiumRNA.pdf
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 395.90 Stdv: 15.76 Min: 369.58 Max: 425.26

Submission date

Nov 22, 2002

Last update date

Mar 20, 2006

Contact name

John R Walker

E-mail(s)

jwalker@gnf.org

Phone

858-812-1636

Organization name

Genomics Institute of the Novartis Research Foundation

Lab

Genetics Core

Street address

10675 John Jay Hopkins

City

San Diego

State/province

CA

ZIP/Postal code

92121

Country

USA

Platform ID

Series (1)

Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF	Affymetrix Probe Set Identifier
Positive	Number of positive probe pairs
Negative	Number of negative probe pairs
Pairs	Number of probe set specific probe pairs on the array
Pairs_Used	Pairs used
Pairs_InAvg
Pos_Fraction	Positive/Pairs_Used
Log_Avg	Log average
PM_Excess	Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess	Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg	Positive/Negative
VALUE	Average Difference Intensity
ABS_CALL	Whether a probe set is present, marginal, or absent

Data table
ID_REF	Positive	Negative	Pairs	Pairs_Used	Pairs_InAvg	Pos_Fraction	Log_Avg	PM_Excess	MM_Excess	Pos/Neg	VALUE	ABS_CALL
1000_at	12	1	16	16	15	0.75	3.17	0	0	12.00	982.28	P
1001_at	2	0	16	16	15	0.12	0.40	0	0	Undef	41.09	A
1002_f_at	2	2	16	16	14	0.12	0.32	0	0	1.00	81.85	A
1003_s_at	6	2	16	16	14	0.38	0.41	0	0	3.00	94.52	A
1004_at	5	3	16	16	15	0.31	0.12	0	0	1.67	-8.25	A
1005_at	7	2	16	16	15	0.44	1.17	0	0	3.50	80.51	M
1006_at	3	3	16	16	14	0.19	0.04	0	0	1.00	-28.51	A
1007_s_at	12	1	16	16	16	0.75	4.00	0	0	12.00	1054.39	P
1008_f_at	9	1	16	16	16	0.56	1.70	0	0	9.00	750.97	P
1009_at	13	0	16	16	15	0.81	4.47	0	0	Undef	2014.58	P
100_g_at	4	2	16	16	15	0.25	0.90	0	0	2.00	270.77	A
1010_at	3	3	16	16	13	0.19	-0.52	0	0	1.00	-9.83	A
1011_s_at	12	1	16	16	14	0.75	3.50	0	0	12.00	424.30	P
1012_at	4	2	16	16	14	0.25	1.35	0	0	2.00	71.27	A
1013_at	6	0	16	16	15	0.38	1.44	0	0	Undef	43.58	P
1014_at	6	1	16	16	15	0.38	1.51	0	0	6.00	71.29	P
1015_s_at	1	3	16	16	15	0.06	-0.12	0	0	0.33	-183.67	A
1016_s_at	1	0	16	16	15	0.06	0.48	0	0	Undef	40.12	A
1017_at	9	1	16	16	15	0.56	2.01	0	0	9.00	96.52	P
1018_at	4	1	16	16	14	0.25	0.66	0	0	4.00	137.13	A

Total number of rows: 12600

Table truncated, full table size 622 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM2884.CEL.gz	3.2 Mb	(ftp)(http)	CEL

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