|
Status |
Public on Feb 23, 2018 |
Title |
WH003B_Control |
Sample type |
genomic |
|
|
Source name |
WH003B
|
Organism |
Homo sapiens |
Characteristics |
individual: WH003B cell type: Buccal epithelial cells Sex: F disease status: Control disease subgroup: Control age: 16 self-reported ethnicity: German/Ukrainian sentrix id: 100994770129 sentrix position: R03C01
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was isolated using the Isohelix DNA isolation kit and bisulfite converted with the Zymo EZ DNA Methylation Kit, as per manufacturer’s instructions.
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Infinium HumanMethylation450k Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged with BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
WH003C
|
Data processing |
GenomeStudio software V2011.1 with GenomeStudio Methylation Analysis Module Version 1.9.1000 (background-subtraction, colour-correction)
|
|
|
Submission date |
Jan 14, 2018 |
Last update date |
Feb 23, 2018 |
Contact name |
Michael S. Kobor |
Organization name |
Centre for Molecular Medicine and Therapeutics / University of British Columbia
|
Department |
Medical Genetics
|
Lab |
Kobor
|
Street address |
950 West 28th Avenue
|
City |
Vancouver |
State/province |
BC |
ZIP/Postal code |
V5Z 4H4 |
Country |
Canada |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE109042 |
DNA methylation as a predictor of fetal alcohol spectrum disorder |
|