|
| Status |
Public on Dec 05, 2018 |
| Title |
Sarcoidosis sample 3 [cbdexp] |
| Sample type |
RNA |
| |
|
| Source name |
BAL fluid
|
| Organism |
Homo sapiens |
| Characteristics |
dx: Sarcoidosis
Sex: Male
race: W
ethnicity: non-hispanic
smoking status: Current
forced vital capacity, percent predicted: 103
forced expiratory volume in one second, percent predicted: 98
diffusing capacity of the lung for carbon monoxide, percent predicted: 74
age: 47
treatment: Untreated
2nddrug: MTX
|
| Treatment protocol |
NA, cells did not undergo treatment prior to extraction
|
| Growth protocol |
NA, primary patient cells were used
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen AllPrep
|
| Label |
Cy3
|
| Label protocol |
Ambion Message Amp II Kit
|
| |
|
| Hybridization protocol |
Affymetrix manufacturer instructions
|
| Scan protocol |
GCOS
|
| Description |
polyA selected RNA extracted from BALF
|
| Data processing |
Partek Genomics Suite used for QC and analysis, data was quantile normalized and log transformed
|
| |
|
| Submission date |
Feb 18, 2018 |
| Last update date |
Dec 05, 2018 |
| Contact name |
Ivana Yang |
| E-mail(s) |
ivana.yang@cuanschutz.edu
|
| Organization name |
University of Colorado - Anschutz Medical Campus
|
| Street address |
12700 E 19th Ave
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (2) |
| GSE110779 |
DNA Methylation Changes in Lung Immune Cells are Associated with Granulomatous Lung Disease [CBD exp] |
| GSE110780 |
DNA Methylation Changes in Lung Immune Cells are Associated with Granulomatous Lung Disease |
|
