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Sample GSM302880 Query DataSets for GSM302880
Status Public on Sep 02, 2008
Title Osteoarthritis, synovial membrane patient EB24 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB24 (osteoarthritis)
Organism Homo sapiens
Characteristics sex:f
age: 71
disease: osteoarthritis
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 02, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) huber.rene@mh-hannover.de
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL96
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 130.898 P 0.036569
AFFX-BioB-M_at 215.951 P 0.00179591
AFFX-BioB-3_at 134.522 P 0.0125468
AFFX-BioC-5_at 533.17 P 9.4506e-05
AFFX-BioC-3_at 455.819 P 6.02111e-05
AFFX-BioDn-5_at 492.476 P 0.000126798
AFFX-BioDn-3_at 3385.34 P 0.000340305
AFFX-CreX-5_at 1826.68 P 4.42873e-05
AFFX-CreX-3_at 3833.57 P 5.16732e-05
AFFX-DapX-5_at 38.075 A 0.0780018
AFFX-DapX-M_at 38.3774 A 0.139482
AFFX-DapX-3_at 3.67901 A 0.981719
AFFX-LysX-5_at 1.74395 A 0.945787
AFFX-LysX-M_at 5.53649 A 0.843268
AFFX-LysX-3_at 1.30632 A 0.672921
AFFX-PheX-5_at 2.6993 A 0.963431
AFFX-PheX-M_at 6.14683 A 0.814869
AFFX-PheX-3_at 39.2335 A 0.41138
AFFX-ThrX-5_at 6.31752 A 0.760937
AFFX-ThrX-M_at 5.38037 A 0.783476

Total number of rows: 22283

Table truncated, full table size 672 Kbytes.




Supplementary file Size Download File type/resource
GSM302880_EB_24.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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