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Sample GSM303361 Query DataSets for GSM303361
Status Public on Sep 02, 2008
Title Osteoarthritis, synovial membrane patient EB100 (Affymetrx U133B)
Sample type RNA
 
Source name synovial membrane patient EB100 (osteoarthritis)
Organism Homo sapiens
Characteristics sex: f
age: 71
disease: osteoarthritis
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 03, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) huber.rene@mh-hannover.de
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL97
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 563.956 P 0.026111
AFFX-BioB-M_at 1192.93 P 0.00179591
AFFX-BioB-3_at 505.077 P 0.0239288
AFFX-BioC-5_at 2303.88 P 7.00668e-05
AFFX-BioC-3_at 2050.34 P 6.02111e-05
AFFX-BioDn-5_at 1688.22 P 0.000169227
AFFX-BioDn-3_at 12429.8 P 0.000195116
AFFX-CreX-5_at 7975.71 P 4.42873e-05
AFFX-CreX-3_at 16696.9 P 5.16732e-05
AFFX-DapX-5_at 18.769 A 0.631562
AFFX-DapX-M_at 136.92 A 0.287743
AFFX-DapX-3_at 9.53351 A 0.989683
AFFX-LysX-5_at 54.6702 A 0.617401
AFFX-LysX-M_at 24.638 A 0.737173
AFFX-LysX-3_at 95.7683 A 0.327079
AFFX-PheX-5_at 14.8333 A 0.960339
AFFX-PheX-M_at 14.4293 A 0.953518
AFFX-PheX-3_at 77.1083 A 0.52976
AFFX-ThrX-5_at 16.8866 A 0.904333
AFFX-ThrX-M_at 37.0269 A 0.724854

Total number of rows: 22645

Table truncated, full table size 656 Kbytes.




Supplementary file Size Download File type/resource
GSM303361_EB_100_B.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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