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Sample GSM303362 Query DataSets for GSM303362
Status Public on Sep 02, 2008
Title Osteoarthritis, synovial membrane patient EB104 (Affymetrx U133A)
Sample type RNA
 
Source name synovial membrane patient EB104 (osteoarthritis)
Organism Homo sapiens
Characteristics sex: f
age: 80
disease: osteoarthritis
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 03, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) huber.rene@mh-hannover.de
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL96
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 153.308 P 0.0044838
AFFX-BioB-M_at 298.975 P 0.0012475
AFFX-BioB-3_at 170.698 P 0.00556451
AFFX-BioC-5_at 648.905 P 5.16732e-05
AFFX-BioC-3_at 599.295 P 5.16732e-05
AFFX-BioDn-5_at 733.51 P 6.02111e-05
AFFX-BioDn-3_at 3865.92 P 0.000296708
AFFX-CreX-5_at 2671.02 P 4.42873e-05
AFFX-CreX-3_at 4653.67 P 5.16732e-05
AFFX-DapX-5_at 15.7959 A 0.340661
AFFX-DapX-M_at 26.2348 A 0.327079
AFFX-DapX-3_at 1.27233 A 0.99156
AFFX-LysX-5_at 2.92436 A 0.904333
AFFX-LysX-M_at 7.30616 A 0.783476
AFFX-LysX-3_at 14.2246 A 0.51489
AFFX-PheX-5_at 2.21071 A 0.916408
AFFX-PheX-M_at 3.13606 A 0.945787
AFFX-PheX-3_at 12.7316 A 0.749204
AFFX-ThrX-5_at 8.45986 A 0.814869
AFFX-ThrX-M_at 6.83569 A 0.772364

Total number of rows: 22283

Table truncated, full table size 673 Kbytes.




Supplementary file Size Download File type/resource
GSM303362_EB_104.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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