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Sample GSM30827 Query DataSets for GSM30827
Status Public on Oct 12, 2004
Title RD01D010
Sample type RNA
 
Source name whole head
Organism Drosophila melanogaster
Extracted molecule total RNA
 
Description Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 4 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes
 
Submission date Sep 21, 2004
Last update date May 27, 2005
Contact name Zhiyong Yang
E-mail(s) zhiyongy@bcm.tmc.edu
Phone 713-7988168
Organization name Baylor College of Medicine
Street address
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL72
Series (1)
GSE1790 Isolation of mRNA from fly photoreceptor cells by mRNA tagging

Data table header descriptions
ID_REF gene specific probe set
VALUE the abundance of a transcript measured as model-based expression index by PM-only model using dChip (version 1.3) program
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
SE standard error

Data table
ID_REF VALUE ABS_CALL SE
AFFX-MurIL2_at 50.8515 A 1.64042
AFFX-MurIL10_at 85.5282 A 4.14382
AFFX-MurIL4_at 57.311 A 1.64943
AFFX-MurFAS_at 12.0277 A 1.43187
AFFX-BioB-5_at 318.195 P 15.0635
AFFX-BioB-M_at 736.175 P 23.2974
AFFX-BioB-3_at 514.792 P 17.7481
AFFX-BioC-5_at 1425.94 P 57.1499
AFFX-BioC-3_at 1234.71 P 22.6955
AFFX-BioDn-5_at 2582.44 P 65.0803
AFFX-BioDn-3_at 7956.77 P 242.907
AFFX-CreX-5_at 14540.4 P 321.764
AFFX-CreX-3_at 18236 P 540.788
AFFX-DapX-5_at 47.1461 A 2.00449
AFFX-DapX-M_at 66.4769 A 1.28482
AFFX-DapX-3_at 52.2221 A 2.47561
AFFX-LysX-5_at 35.6892 A 0.935547
AFFX-LysX-M_at 81.4534 A 2.45308
AFFX-LysX-3_at 74.2184 A 5.15601
AFFX-PheX-5_at 34.2376 A 2.14659

Total number of rows: 14010

Table truncated, full table size 381 Kbytes.




Supplementary data files not provided

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