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Sample GSM3172790 Query DataSets for GSM3172790
Status Public on Dec 31, 2018
Title normal colon, replicate 1
Sample type RNA
 
Source name normal colon tissue
Organism Homo sapiens
Characteristics disease: normal
Treatment protocol no treatment
Growth protocol no culture
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix WT plus kit
 
Hybridization protocol Clariom D array
Scan protocol Affymetrix Model 450 Fluidics Station and Affymetrix Model 3000 7G
Description Gene expression data from normal colon tissue
Data processing Expression Console software (Affymetrix)
 
Submission date Jun 04, 2018
Last update date Dec 31, 2018
Contact name bin zhang
E-mail(s) zhangbin@picb.ac.cn
Phone (65)96100417
Organization name National University of Singapore
Department Cancer Science Institute of Singapore
Street address 14 Medical Drive, #12-01
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL23126
Series (1)
GSE115261 Expression data of colon adenocarcinoma and normal colon

Data table header descriptions
ID_REF
VALUE log2-sst-rma-gene-full

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 7.48105
AFFX-BkGr-GC04_st 6.45447
AFFX-BkGr-GC05_st 6.08071
AFFX-BkGr-GC06_st 5.35053
AFFX-BkGr-GC07_st 4.72707
AFFX-BkGr-GC08_st 4.0274
AFFX-BkGr-GC09_st 3.78631
AFFX-BkGr-GC10_st 3.50622
AFFX-BkGr-GC11_st 3.19021
AFFX-BkGr-GC12_st 3.07167
AFFX-BkGr-GC13_st 2.82078
AFFX-BkGr-GC14_st 2.60228
AFFX-BkGr-GC15_st 2.50214
AFFX-BkGr-GC16_st 2.55432
AFFX-BkGr-GC17_st 2.51106
AFFX-BkGr-GC18_st 2.62942
AFFX-BkGr-GC19_st 2.74701
AFFX-BkGr-GC20_st 2.78808
AFFX-BkGr-GC21_st 2.88319
AFFX-BkGr-GC22_st 3.29632

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3172790_N1_Clariom_D_Human_.CEL.gz 22.3 Mb (ftp)(http) CEL
GSM3172790_N1_Clariom_D_Human_.sst-rma-gene-full.chp.gz 888.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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