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Sample GSM32399 Query DataSets for GSM32399
Status Public on Oct 23, 2004
Title Untreated Raw 264.7 cells 2 hours vs Interferon-gamma treated RAw 264.7 cells 2 hours. (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from untreated RAW 264.7 cells was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from Interferon-gamma (5nM) RAW 264.7 cells was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 2 hours.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from Interferon-gamma (5nM) RAW 264.7 cells cultured for 2 hours.
 
Submission date Oct 15, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE1863 Dual Ligand Effects

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 93177.8 60652.8 61611 3999.85 432.978 430 15.9427 5171.22 3108.04 2955 582.633 307.412 306 12.6728 -1.25572 0
2 84.7855 468.538 469.5 8.48165 424.037 423 8.19883 88.5023 354.115 354.5 14.9059 303.92 304 12.1736 0.0186329 0
3 14.0786 419.04 420 6.4774 421.558 421 6.90362 15.6152 305.88 304 10.6196 303.851 304 11.17 0 0
4 150.021 503.077 504.5 15.628 420.883 420 7.89165 165.58 402.577 404 20.0622 305.5 305 13.1585 0.0428545 0
5 13.7474 421.577 420 5.87315 422.846 423 7.03824 17.8992 302.962 306 12.3822 303.228 302 12.2635 0 0
6 176.252 520.56 523 16.6109 423.066 423 8.80598 178.278 406.88 403 20.9251 302.467 302 10.5723 0.00496362 0
7 17.7158 425.308 423.5 8.77163 424.318 424 9.10561 18.3157 303.769 305 10.7752 307.176 306 12.4996 0 0
8 18120.1 12250.5 12169 523.077 424.948 425 8.55493 15420.3 8585.87 8332 494.214 305.429 305 11.6293 -0.0700672 -0.23275820021009169
9 619.845 810.926 811 25.6499 421.576 421 8.12819 504.321 578.37 584 33.7458 304.386 304.5 12.0824 -0.0895763 -0.29756602760605877
10 270.998 574.038 578 19.2468 419.526 419 8.2993 223.003 432.846 430.5 25.6386 303.669 304 10.4344 -0.0846557 -0.28122014822235619
11 133.693 494 492 19.0473 421.408 422 8.67206 136.489 381.269 379 20.7414 301.841 302 12.011 0.00898844 0.029858951365209347
12 74080.6 45828.4 45368 5514.64 424.428 424 9.45159 71088.9 40985.8 40962 6764.07 308.809 308 14.8724 -0.0179026 -0.059471149911530505
13 219.827 547.615 546 23.0219 423.559 423 9.52946 234.095 443.615 436.5 30.4343 306.795 306 11.8333 0.0273103 0.090722852849802318
14 142.808 500.923 498.5 12.9273 423.031 423 8.33173 148.142 391.5 390 18.47 305 303 12.3024 0.0159271 0.05290868096008057
15 37832.5 24378.2 23980 2852.78 426.868 426.5 10.7177 32500.5 18306.9 17214 2566.74 307.382 306.5 11.9579 -0.0659746 -0.21916287728895575
16 225.699 555.76 556 12.2075 423.234 422 8.17653 496.372 590.24 592 41.1352 304.93 305 11.6445 0.342278 1.1370229044618567
17 271.059 583.357 587 20.0392 422.455 422 9.1266 472.55 572.214 571.5 34.2922 303.013 302 12.3252 0.241383 0.80185696932819628
18 16756.4 11365.7 11235 412.664 426.046 424 10.8014 16292 9049.76 8978 388.78 304.265 303 13.7587 -0.0122042 -0.040541474855624406
19 133.278 496.417 495.5 12.5279 424.121 424 8.19267 128.92 381.167 380 17.6504 306.401 306 13.2911 -0.0144392 -0.04796598414769758
20 42576.7 27125.7 27101 865.176 428.203 426 11.096 44510.9 25200.5 25055 1070.55 309.203 308 15.7093 0.0192947 0.064095606012423062

Total number of rows: 16281

Table truncated, full table size 2081 Kbytes.




Supplementary data files not provided
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