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GEO accession:
Sample GSM3301649
Query DataSets for GSM3301649
Status
Public on Nov 19, 2019
Title
Parental A431-2
Sample type
RNA
Source name
Human A431 cell line
Organism
Homo sapiens
Characteristics
cell line: A431
genotype/variation: Wildtype
Treatment protocol
Knockout CD109 by CRISPR/case9
Growth protocol
NA
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated from cultured cells using RNeasy mini Kit (Cat. NO. 74104, QIAGEN)
Label
biotin
Label protocol
Affymetrix
Hybridization protocol
Affymetrix
Scan protocol
Affymetrix
Data processing
The data were analyzed with Transcriptome Analysis Console (TAC) 4.0.1 (TCA 4.0) using Clariom_S_Human.na36.hg38.transcript.csv
Submission date
Jul 23, 2018
Last update date
Nov 19, 2019
Contact name
Anie Philip
E-mail(s)
anie.philip@mcgill.ca
Organization name
Mcgill university
Street address
1650 Cedar Avenue
City
Montreal
ZIP/Postal code
H3G 1A4
Country
Canada
Platform ID
GPL23159
Series (1)
GSE117475
Expression data to parental A431 VS CD109 KO A431
Data table header descriptions
ID_REF
VALUE
log2-rma
Data table
ID_REF
VALUE
AFFX-BkGr-GC03_st
1.69075
AFFX-BkGr-GC04_st
1.58096
AFFX-BkGr-GC05_st
1.61688
AFFX-BkGr-GC06_st
1.6399
AFFX-BkGr-GC07_st
1.69159
AFFX-BkGr-GC08_st
1.75524
AFFX-BkGr-GC09_st
1.73101
AFFX-BkGr-GC10_st
1.83471
AFFX-BkGr-GC11_st
1.97731
AFFX-BkGr-GC12_st
2.12344
AFFX-BkGr-GC13_st
2.45329
AFFX-BkGr-GC14_st
2.87542
AFFX-BkGr-GC15_st
3.24752
AFFX-BkGr-GC16_st
4.09168
AFFX-BkGr-GC17_st
4.49375
AFFX-BkGr-GC18_st
5.16393
AFFX-BkGr-GC19_st
5.77534
AFFX-BkGr-GC20_st
6.02635
AFFX-BkGr-GC21_st
6.24493
AFFX-BkGr-GC22_st
6.82686
Total number of rows:
24351
Table truncated, full table size
635 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3301649_A431-2_APP048F06F06_01.CEL.gz
1019.3 Kb
(ftp)
(http)
CEL
GSM3301649_A431-2_APP048F06F06_01.rma-gene-full.chp.gz
173.1 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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