GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM33763

Query DataSets for GSM33763

Status

Public on Oct 28, 2004

Title

HCC008_Cy5

Sample type

RNA

Channel 1

Source name

HCC008

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 38562

Array Print: Hs-OperonV2-vB1.1p3-013003
Tissue_type: Hepatocellular Carcinoma
Sample: HCC008
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.364	0.777	1	1	1	765	237	152	49	1018	249	229	53	0
1174364_1	-0.400	0.758	1	1	2	1908	292	150	52	2534	302	214	50	0
1175152_1	-0.230	0.853	1	1	3	740	181	149	53	898	208	205	38	0
1175940_1	-0.068	0.954	1	1	4	958	216	148	50	1063	202	214	41	0
1176716_1	0.274	1.209	1	1	5	1317	267	148	49	1187	240	220	45	0
1177504_1	0.224	1.168	1	1	6	1098	189	152	46	1027	169	217	43	0
1178580_1	-0.245	0.844	1	1	7	1265	248	147	89	1538	293	213	232	0
1179356_1	-0.233	0.851	1	1	8	516	162	145	80	639	183	203	47	0
1180144_1	-0.336	0.792	1	1	9	641	156	146	87	820	178	195	43	0
1180932_1	-0.409	0.753	1	1	10	437	136	147	72	577	136	192	46	0
1181708_1	-0.168	0.890	1	1	11	543	166	147	74	640	158	195	123	0
1182496_1	-0.207	0.866	1	1	12	453	137	148	78	550	161	198	118	0
1183572_1	-0.088	0.941	1	1	13	813	198	148	78	912	260	205	48	0
1184348_1	-0.072	0.951	1	1	14	572	155	144	82	654	167	204	144	0
1185136_1	-0.260	0.835	1	1	15	232	188	146	55	300	207	197	53	-50
1185924_1	-0.263	0.834	1	1	16	721	154	140	48	888	180	191	42	0
1186700_1	-0.230	0.853	1	1	17	859	228	140	76	1037	193	194	120	0
1187488_1	-0.261	0.835	1	1	18	559	137	135	74	699	182	191	119	0
1188564_1	0.012	1.008	1	1	19	2013	392	137	70	2069	499	208	54	0
1189340_1	0.063	1.044	1	1	20	826	233	143	78	886	215	232	59	0

Total number of rows: 21794

Table truncated, full table size 1332 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |