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Sample GSM3633684

Query DataSets for GSM3633684

Status

Public on Mar 02, 2019

Title

WGBS from ovary (ENCLB858YYV)

Sample type

SRA

Source name

Homo sapiens female adult (53 years) ovary tissue

Organism

Homo sapiens

Characteristics

tissue_type: ovary
biomaterial_type: tissue
biosample encode accession: ENCBS886KXL (SAMN10987245)
Sex: female
dev stage: adult
age: 53 year
donor_id: ENCDO793LXB
lab: Richard Myers, HAIB
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
link: ENCBS886KXL at ENCODE; https://www.encodeproject.org/ENCBS886KXL/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/9d9cbba0-5ebe-482b-9fa3-d93a968a7045/@@download/attachment/WGBS_V4_protocol.pdf

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

RANDOM

Instrument model

HiSeq X Ten

Description

https://www.encodeproject.org/experiments/ENCSR305VIT/
***************
biological replicate number: 1
technical replicate number: 1
description: whole genome bisulfite sequencing from human ovary tissue
experiment encode accession: ENCSR305VIT
assay title: WGBS
assembly: GRCh38
encode release date: 2017-12-04
lab: Richard Myers, HAIB
library encode accession: ENCLB858YYV

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Feb 27, 2019

Last update date

Mar 26, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL20795

Series (1)

GSE127293

WGBS from ovary (ENCSR305VIT)

Relations

BioSample

SAMN10987245

SRA

SRX5457084

Named Annotation

GSM3633684_ENCFF328YEO_signal_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM3633684_ENCFF052DAU_methylation_state_at_CHG_GRCh38.bed.gz	2.5 Gb	(ftp)(http)	BED
GSM3633684_ENCFF303ZGP_methylation_state_at_CpG_GRCh38.bed.gz	655.4 Mb	(ftp)(http)	BED
GSM3633684_ENCFF328YEO_signal_GRCh38.bigWig	7.2 Gb	(ftp)(http)	BIGWIG
GSM3633684_ENCFF425UGD_methylation_state_at_CHH_GRCh38.bed.gz	8.0 Gb	(ftp)(http)	BED
GSM3633684_ENCFF490SFF_methylation_state_at_CHH_GRCh38.bigBed	10.9 Gb	(ftp)(http)	BIGBED
GSM3633684_ENCFF561KYJ_methylation_state_at_CpG_GRCh38.bigBed	1.2 Gb	(ftp)(http)	BIGBED
GSM3633684_ENCFF993NQL_methylation_state_at_CHG_GRCh38.bigBed	4.3 Gb	(ftp)(http)	BIGBED
GSM3633684_ENCLB858YYV_README.txt.gz	799 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file