|
Status |
Public on May 10, 2020 |
Title |
Mucosa sample from V2133_M healthy donor |
Sample type |
genomic |
|
|
Source name |
colon
|
Organism |
Homo sapiens |
Characteristics |
tissue: Mucosa gender: Male age: 79 location: Right
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from colon tissue by the phenol-chloroform procedure, quantified using a Nano Drop ND 2000c spectrophotometer (NanoDrop Thermo scientific, Wilmington, DE) and stored at 4ºC.
|
Label |
Cy3, Cy5
|
Label protocol |
Cy3 and Cy5; Standard Illumina labelling protocol
|
|
|
Hybridization protocol |
Bisulfite conversion of DNA (200-500 ng) was performed according to the manufacturer’s recommendations for the Illumina Infinium Assay (EZ DNA methylation kit. Zymo Research. Cat. No. D5004).
|
Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
Description |
Extraction by phenol-chloroform procedure, quantified with Nano Drop ND 2000c V2133_M
|
Data processing |
Methylation level at each locus was measured using β values calculated based on Illumina’s standard, using the average probe intensity for the methylated and unmethylated alleles matrix processed value definition: Average Beta
|
|
|
Submission date |
May 10, 2019 |
Last update date |
Aug 31, 2023 |
Contact name |
Victor Moreno |
E-mail(s) |
v.moreno@iconcologia.net
|
Organization name |
Catalan Institute of Oncology
|
Department |
Oncology Data Analytics Program
|
Street address |
Granvia 199
|
City |
L'Hospitalet de Llobregat |
State/province |
Barcelona |
ZIP/Postal code |
08908 |
Country |
Spain |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE131013 |
Methylation data from healthy, adjacent normal and tumor colon cells |
GSE166427 |
Healthy, adjacent normal and tumor colon cells |
|