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GEO accession:
Sample GSM383735
Query DataSets for GSM383735
Status
Public on Mar 20, 2009
Title
SAGE_Brain_glioblastoma_CL_stem_cells
Sample type
SAGE
Anchor
NlaIII
Tag Count
108414
Tag Length
10
Source name
brain, glioblastoma multiforme, cell line, extacted short sage
Organism
Homo sapiens
Characteristics
organ/tissue: brain
tissue preparation: cell line
age: unknown
sex: unknown
mutations: unknown
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 1649
Tagging_enzyme: Mme I
Laboratory: Riggins lab
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL4
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309
Cancer Genome Anatomy Project (CGAP) Human SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
74
682.57
AAAAAAAAAG
2
18.45
AAAAAAAACA
2
18.45
AAAAAAAAGA
9
83.02
AAAAAAAAGG
1
9.22
AAAAAAAATG
1
9.22
AAAAAAAGCA
1
9.22
AAAAAAAGTG
1
9.22
AAAAAAATAA
1
9.22
AAAAAAATCA
1
9.22
AAAAAAATTT
12
110.69
AAAAAACAAA
1
9.22
AAAAAACAGA
1
9.22
AAAAAACATT
4
36.90
AAAAAACCCA
28
258.27
AAAAAACCCT
1
9.22
AAAAAACGCA
1
9.22
AAAAAACGGT
1
9.22
AAAAAACTCA
1
9.22
AAAAAACTCC
1
9.22
Total number of rows:
33840
Table truncated, full table size
608 Kbytes
.
Supplementary data files not provided
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