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Sample GSM383813

Query DataSets for GSM383813

Status

Public on Mar 20, 2009

Title

SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC7

Sample type

SAGE

Anchor

NlaIII

Tag Count

73410

Tag Length

Source name

breast, epithelium, antibody purified, carcinoma, extracted short sage, adult, female

Organism

Homo sapiens

Characteristics

organ/tissue: mammary gland
tissue preparation: antibody purified
age: 47
sex: female
cell type: invasive breast cancer, ER+, PR+, Her-, grade II
other information: BerEP4 purified epithelial cells

Biomaterial provider

Andrea Richardson, M.D., Ph.D.

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 418
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	117	1593.79
AAAAAAAAAC	1	13.62
AAAAAAAAAG	1	13.62
AAAAAAAAGA	2	27.24
AAAAAAACCC	3	40.87
AAAAAAACTC	1	13.62
AAAAAAAGAA	2	27.24
AAAAAAAGGG	1	13.62
AAAAAAAGTT	1	13.62
AAAAAAATAA	2	27.24
AAAAAAATAC	1	13.62
AAAAAAATGA	1	13.62
AAAAAAATTT	1	13.62
AAAAAACATC	1	13.62
AAAAAACATT	1	13.62
AAAAAACCCA	25	340.55
AAAAAACCCC	4	54.49
AAAAAACTCC	1	13.62
AAAAAACTGC	1	13.62
AAAAAACTTC	1	13.62

Total number of rows: 25005

Table truncated, full table size 466 Kbytes.

Supplementary data files not provided