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Sample GSM383911

Query DataSets for GSM383911

Status

Public on Mar 20, 2009

Title

SAGE_Lung_normal_B_1

Sample type

SAGE

Anchor

NlaIII

Tag Count

88708

Tag Length

Source name

lung, normal, non-normalized, short SAGE, bulk

Organism

Homo sapiens

Characteristics

organ/tissue: lung
tissue preparation: bulk
age: 20
sex: male
cell type: normal
other information: Ambion cat #7968, lot #011P27A. Whole lung RNA from motor vehicle accident victim.

Biomaterial provider

Purchased from Ambion

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 99
Tagging_enzyme: BsmF I
Old_library_name: SAGE_normal_lung
Library_producer: Robert Beaty
Laboratory: Gregory Riggins, Duke University Medical Center

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	240	2705.51
AAAAAAAAAC	1	11.27
AAAAAAAAAG	1	11.27
AAAAAAAAAT	1	11.27
AAAAAAAACA	1	11.27
AAAAAAAAGA	12	135.28
AAAAAAAAGG	1	11.27
AAAAAAAAGT	1	11.27
AAAAAAAATC	1	11.27
AAAAAAAATG	1	11.27
AAAAAAACAA	1	11.27
AAAAAAACTC	1	11.27
AAAAAAAGAA	2	22.55
AAAAAAAGCA	1	11.27
AAAAAAATAA	2	22.55
AAAAAAATCA	12	135.28
AAAAAACAGC	2	22.55
AAAAAACATT	1	11.27
AAAAAACCCA	26	293.10
AAAAAACCTA	1	11.27

Total number of rows: 24764

Table truncated, full table size 462 Kbytes.

Supplementary data files not provided