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Sample GSM384122 Query DataSets for GSM384122
Status Public on Mar 20, 2009
Title LSAGE_Peripheral_Blood_Cancer_B_hs0429
Sample type SAGE
Anchor NlaIII
Tag Count 5756848
Tag Length 17
 
Source name other, cancer, bulk, long sage, slx-sage, solexa sage, male, peripheral blood from aml patient
Organism Homo sapiens
Characteristics organ/tissue: other
tissue preparation: bulk
sex: male
cell type: Peripheral blood from AML patient
other information: SLX-SAGE
Biomaterial provider Donna Hogge, British Columbia Cancer Agency
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2367
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 18297 3178.30
AAAAAAAAAAAAAAAAC 356 61.84
AAAAAAAAAAAAAAAAG 92 15.98
AAAAAAAAAAAAAAAAT 714 124.03
AAAAAAAAAAAAAAACA 73 12.68
AAAAAAAAAAAAAAACC 13 2.26
AAAAAAAAAAAAAAACT 12 2.08
AAAAAAAAAAAAAAAGA 29 5.04
AAAAAAAAAAAAAAAGC 9 1.56
AAAAAAAAAAAAAAAGG 5 0.87
AAAAAAAAAAAAAAAGT 6 1.04
AAAAAAAAAAAAAAATA 96 16.68
AAAAAAAAAAAAAAATC 49 8.51
AAAAAAAAAAAAAAATG 9 1.56
AAAAAAAAAAAAAAATT 19 3.30
AAAAAAAAAAAAAACAA 48 8.34
AAAAAAAAAAAAAACAC 6 1.04
AAAAAAAAAAAAAACAT 4 0.69
AAAAAAAAAAAAAACCA 2 0.35
AAAAAAAAAAAAAACCG 3 0.52

Total number of rows: 189175

Table truncated, full table size 4670 Kbytes.




Supplementary data files not provided

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