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Status
Public on Mar 20, 2009
Title
LSAGE_Peripheral_Blood_Cancer_B_hs0429
Sample type
SAGE
Anchor
NlaIII
Tag Count
5756848
Tag Length
17
Source name
other, cancer, bulk, long sage, slx-sage, solexa sage, male, peripheral blood from aml patient
Organism
Homo sapiens
Characteristics
organ/tissue: other tissue preparation: bulk sex: male cell type: Peripheral blood from AML patient other information: SLX-SAGE
Biomaterial provider
Donna Hogge, British Columbia Cancer Agency
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2367 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314
Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
18297
3178.30
AAAAAAAAAAAAAAAAC
356
61.84
AAAAAAAAAAAAAAAAG
92
15.98
AAAAAAAAAAAAAAAAT
714
124.03
AAAAAAAAAAAAAAACA
73
12.68
AAAAAAAAAAAAAAACC
13
2.26
AAAAAAAAAAAAAAACT
12
2.08
AAAAAAAAAAAAAAAGA
29
5.04
AAAAAAAAAAAAAAAGC
9
1.56
AAAAAAAAAAAAAAAGG
5
0.87
AAAAAAAAAAAAAAAGT
6
1.04
AAAAAAAAAAAAAAATA
96
16.68
AAAAAAAAAAAAAAATC
49
8.51
AAAAAAAAAAAAAAATG
9
1.56
AAAAAAAAAAAAAAATT
19
3.30
AAAAAAAAAAAAAACAA
48
8.34
AAAAAAAAAAAAAACAC
6
1.04
AAAAAAAAAAAAAACAT
4
0.69
AAAAAAAAAAAAAACCA
2
0.35
AAAAAAAAAAAAAACCG
3
0.52
Total number of rows: 189175 Table truncated, full table size 4670 Kbytes .Supplementary data files not provided