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Sample GSM389958 Query DataSets for GSM389958
Status Public on Feb 28, 2010
Title X4320028017_D
Sample type RNA
 
Source name PAXgene stabilized blood
Organism Homo sapiens
Characteristics cell type: PBMC
Growth protocol Peripheral blood samples
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Non Bronchial Carcinoma
Data processing The data were normalised using quantile normalisation in R
 
Submission date Apr 07, 2009
Last update date Oct 23, 2009
Contact name Thomas Zander
Organization name University Hospital Cologne
Street address Kerpenerstr. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL6102
Series (1)
GSE12771 Lung cancer prediction

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 61.99110551
ILMN_1660305 72.19601158
ILMN_1792173 79.91901607
ILMN_1762337 36.36609066
ILMN_1736007 45.59883653
ILMN_1787689 54.54580214
ILMN_1731507 33.8729276
ILMN_1814316 41.0683476
ILMN_1745607 40.96387189
ILMN_1757454 45.1445452
ILMN_1668111 58.20012577
ILMN_1735045 52.40002342
ILMN_1680754 60.88137801
ILMN_1659452 42.86263219
ILMN_1767388 70.99546684
ILMN_1673870 43.10796546
ILMN_1675204 45.95537872
ILMN_1755321 55.30068469
ILMN_1698554 80.38932194
ILMN_1814092 64.67727133

Total number of rows: 48701

Table truncated, full table size 1183 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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