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Sample GSM390010 Query DataSets for GSM390010
Status Public on Feb 28, 2010
Title X4202996064_C
Sample type RNA
 
Source name PAXgene stabilized blood
Organism Homo sapiens
Characteristics cell type: PBMC
Growth protocol Peripheral blood samples
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Bronchial Carcinoma
Data processing The data were normalised using quantile normalisation in R
 
Submission date Apr 07, 2009
Last update date Oct 23, 2009
Contact name Thomas Zander
Organization name University Hospital Cologne
Street address Kerpenerstr. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL6102
Series (1)
GSE12771 Lung cancer prediction

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 56.1957651
ILMN_1660305 87.97682878
ILMN_1792173 72.91498133
ILMN_1762337 41.47316811
ILMN_1736007 48.24135071
ILMN_1787689 47.01294704
ILMN_1731507 38.12522847
ILMN_1814316 45.48434898
ILMN_1745607 46.50714036
ILMN_1757454 56.84717352
ILMN_1668111 61.79074219
ILMN_1735045 57.76144235
ILMN_1680754 59.45813444
ILMN_1659452 42.48178786
ILMN_1767388 71.3001574
ILMN_1673870 40.59976944
ILMN_1675204 49.41581311
ILMN_1755321 72.31050163
ILMN_1698554 82.25820357
ILMN_1814092 56.03311929

Total number of rows: 48701

Table truncated, full table size 1183 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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