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Sample GSM396291 Query DataSets for GSM396291
Status Public on Apr 19, 2011
Title HSF6 P44_1 K27+
Sample type RNA
 
Source name HSF6 P44_1 K27+
Organism Homo sapiens
Characteristics cell type: stem cell
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol
Label cy3
Label protocol CY3-cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with BeadStudio (version 3.1.3.0).
 
Submission date Apr 22, 2009
Last update date Apr 19, 2011
Contact name ANYOU WANG
E-mail(s) anyouwang@mednet.ucla.edu
Organization name UCLA
Department Human Genetics
Street address Gonda BLDG
City Los Angeles
State/province CA
ZIP/Postal code CA90095
Country USA
 
Platform ID GPL8432
Series (1)
GSE15779 Gene expression analysis of pluripotent stem cells

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 209.5525 37 10.16519 0.02588997
ILMN_2055271 89.77373 26 6.05743 0.2006472
ILMN_2383229 76.11338 31 4.669735 0.3203883
ILMN_1806310 63.25635 46 4.646083 0.5436893
ILMN_1779670 67.96543 50 4.047724 0.4304207
ILMN_2321282 74.26228 37 4.52825 0.3430421
ILMN_1772582 385.0328 41 16.61277 0.003236246
ILMN_1717783 84.92699 31 4.798952 0.2556634
ILMN_1814316 136.7155 43 8.225708 0.07119741
ILMN_2359168 147.8434 42 9.563888 0.05501618
ILMN_1731507 34.13568 25 7.040899 0.987055
ILMN_1787689 81.082 38 6.678867 0.2783172
ILMN_1745607 73.84425 37 4.665982 0.3462783
ILMN_2136495 775.9765 30 22.76957 0
ILMN_1668111 50.52418 46 3.162685 0.8122978
ILMN_2295559 52.87539 32 6.026477 0.7346278
ILMN_1735045 1257.156 53 47.35397 0
ILMN_1680754 65.65598 47 5.570801 0.4822007
ILMN_2375184 101.3251 38 6.438159 0.1359223
ILMN_1659452 143.2444 40 8.791504 0.06148867

Total number of rows: 24526

Table truncated, full table size 952 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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