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Sample GSM4049384 Query DataSets for GSM4049384
Status Public on Nov 22, 2019
Title Sample5_596526: D00000000205667_DAY 1_Etanercept
Sample type protein
 
Source name Blood_DAY 1_Etanercept
Organism Homo sapiens
Characteristics visit: DAY 1
treatment: Etanercept 50 mg BIW
treatmentshort: Etanercept
pasi: 29.2
pasi.baseline: 29.2
pasi.week4: 29.2
pasi.week12: 13.2
tag: 55
pasi75.response: NR
age: 54
gender: M
platesimple: Plate1
plate: Plate1_INF_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27152
Series (2)
GSE136434 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (INF data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 8.665678987
Protein_102 13.00835844
Protein_103 8.059245079
Protein_105 4.283310722
Protein_106 2.490807005
Protein_107 4.494697631
Protein_108 6.996359949
Protein_109 3.932829509
Protein_110 10.90505656
Protein_111 7.904831366
Protein_112 11.02757323
Protein_113 4.540403763
Protein_114 4.841934287
Protein_115 12.3406458
Protein_116 2.056450758
Protein_117 8.849404117
Protein_118 1.500885416
Protein_120 9.305224602
Protein_121 0.235451983
Protein_122 8.698280468

Total number of rows: 92

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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