|
| Status |
Public on May 28, 2020 |
| Title |
CAD KO RiboFoot RFP B |
| Sample type |
SRA |
| |
|
| Source name |
CAD cell line
|
| Organism |
Mus musculus |
| Characteristics |
cell compartment: whole cell
genotype: KO
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extraction was performed with Qiagen or Zymo Microprep Kits
Illumina TruSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Adapters were trimmed from the 3' end of reads using cutadapt
Transcript abundances were calculated using salmon or kallisto against the mm10 or hg38 genomes
Gene abundances were calculated from transcript abundances using tximport
Reads were mapped to mouse genome (mm10 or hg38) using STAR
Genome_build: mm10 and hg38
Supplementary_files_format_and_content: transcript abundances in txt format
|
| |
|
| Submission date |
Sep 23, 2019 |
| Last update date |
May 28, 2020 |
| Contact name |
Matthew Taliaferro |
| Organization name |
University of Colorado Anschutz Medical Campus
|
| Department |
Biology
|
| Street address |
12801 E 17th Ave, RC1 South Room 10403D
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE137878 |
Regulation of RNA localization by FMR1 |
|
| Relations |
| BioSample |
SAMN12822429 |
| SRA |
SRX6890785 |
