|
| Status |
Public on Aug 13, 2009 |
| Title |
Chd1 IP from mouse ES cells |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Mouse ES cells, Chd1 IP
|
| Organism |
Mus musculus |
| Characteristics |
cell line: E14
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated using standard procedures and an IP was performed for Chd1.
|
| Label |
Cy5
|
| Label protocol |
Labeling done according to manufacturer's protocol.
|
| |
|
| Channel 2 |
| Source name |
Mouse ES cells, no IP
|
| Organism |
Mus musculus |
| Characteristics |
cell line: E14
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated using standard procedures and no IP was performed.
|
| Label |
Cy3
|
| Label protocol |
Labeling done according to manufacturer's protocol.
|
| |
|
| |
| Hybridization protocol |
Hybridization done according to manufacturer's protocol.
|
| Scan protocol |
Scanning was performed with manufacturer's protocol.
|
| Description |
ChIP-chip (Chd1) of cultured E14 mouse ES cells.
|
| Data processing |
Data analysis was performed using the Agilent Chip-Analytics software v1.3
|
| |
|
| Submission date |
May 28, 2009 |
| Last update date |
Aug 10, 2009 |
| Contact name |
Miguel Ramalho-Santos |
| E-mail(s) |
mrsantos@diabetes.ucsf.edu
|
| Organization name |
UCSF
|
| Department |
Eli and Edythe Broad Center of Regeneration Medicine
|
| Lab |
Santos lab
|
| Street address |
35 Medical Center Way
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platform ID |
GPL7793 |
| Series (1) |
| GSE16462 |
Expression data from Chd1-deficient mouse ES cells (E14 cell lines) and genome-wide binding of Chd1 in parental ES cells |
|
