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Sample GSM416761 Query DataSets for GSM416761
Status Public on Aug 25, 2009
Title MB-MDA231
Sample type SRA
 
Source name cell line
Organism Homo sapiens
Characteristics cell line: MDA231
Growth protocol RNA was harvested from exponentially growing cells
Extracted molecule total RNA
Extraction protocol Total RNA extracted using standard Trizol extraction. Total RNA fractionated on 15% polyacrylamide gel and 3' and 5' adaptors sequentially ligated requiring a 3' hydroxyl group and 5' phosphate
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description none
Data processing Reads containing linker matches were mapped (after removing linkers) to predicted pre-miRNAs (MirBase version 12.0)
 
Submission date Jun 12, 2009
Last update date May 15, 2019
Contact name Christine Mayr
E-mail(s) mayrc@mskcc.org
Organization name Whitehead Institute
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9052
Series (1)
GSE16579 miRNA expression of human cancer and mouse cell lines
Relations
SRA SRX012263
BioSample SAMN00004416

Data table header descriptions
SEQUENCE
COUNT counts

Data table
SEQUENCE COUNT
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGC 767625
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGT 317600
GGCATTAACGCGGCCGCTCTACAATAGTGATCGTAT 243298
TTAACGCGGCCGCTCTACAATAGTGATCGTATGCCG 240855
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 86872
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 79431
CATTAACGCGGCCGCTCTACAATAGTGATCGTATGC 73934
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 55496
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 49403
TAGCACCATTTGAAATCAGTGTTTCGTATGCCGTCT 46436
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 43133
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTTC 28022
GCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGCT 27083
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTTTGT 26923
TGAGAACTGAATTCCATGGGTTTCGTATGCCGTCTT 25831
TAGCACCATCTGAAATCGGTTTCGTATGCCGTCTTC 23820
TAGCAGCACGTAAATATTGGCGTCGTATGCCGTCTT 22708
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTTT 21562
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 18854
GCATTAACGCGGCCGCTCTACAATAGTGATCGTATG 16632

Total number of rows: 616094

Table truncated, full table size 23490 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA
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