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Sample GSM41874 Query DataSets for GSM41874
Status Public on Feb 10, 2006
Title F72A/R73A_0h:Blank_0h - mAdb ID 56122
Sample type RNA
 
Channel 1
Source name Blank_0h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_0h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56122
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 0 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: none
treatment_time (hrs): 0
SAMPLE: F72A/R73A_0h:Blank_0h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.432 0.741 1 1 1 471 228 64 52 689 321 83 30 0 -0.432
1174364_1 0.063 1.044 1 1 2 17356 4722 67 100 18359 4798 85 161 0 0.063
1175152_1 -0.343 0.788 1 1 3 1902 767 66 83 2654 1155 83 147 0 -0.343
1175940_1 0.353 1.277 1 1 4 2327 868 65 29 2038 668 83 32 0 0.353
1176716_1 0.214 1.160 1 1 5 17843 7048 67 30 17002 7513 90 35 0 0.214
1177504_1 1.266 2.404 1 1 6 4804 1705 69 30 2259 856 85 36 0 1.266
1178580_1 0.251 1.190 1 1 7 9908 3778 66 31 9215 3182 83 35 0 0.251
1179356_1 0.345 1.270 1 1 8 510 219 67 41 469 163 84 58 0 0.345
1180144_1 0.523 1.437 1 1 9 4415 1613 65 82 3431 1255 89 53 0 0.523
1180932_1 -0.878 0.544 1 1 10 416 165 64 35 804 267 90 56 0 -0.878
1181708_1 0.275 1.210 1 1 11 1023 284 68 32 960 232 89 37 0 0.275
1182496_1 -1.012 0.496 1 1 12 235 107 67 36 460 189 86 33 0 -1.012
1183572_1 0.367 1.290 1 1 13 2656 653 65 43 2298 497 81 30 0 0.367
1184348_1 -0.151 0.901 1 1 14 517 248 65 37 634 211 80 32 0 -0.151
1185136_1 -1.130 0.457 1 1 15 192 86 74 31 367 130 82 39 0 -1.130
1185924_1 -0.346 0.787 1 1 16 502 214 65 39 697 229 84 36 0 -0.346
1186700_1 0.477 1.392 1 1 17 2081 787 65 43 1682 763 83 35 0 0.477
1187488_1 0.216 1.162 1 1 18 1011 299 65 49 984 276 85 33 0 0.216
1188564_1 0.573 1.488 1 1 19 3397 1466 64 38 2559 868 86 31 0 0.573
1189340_1 -0.177 0.885 1 1 20 1701 819 66 28 2120 900 80 32 0 -0.177

Total number of rows: 21794

Table truncated, full table size 1455 Kbytes.




Supplementary data files not provided
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