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Sample GSM41910 Query DataSets for GSM41910
Status Public on Feb 10, 2006
Title F72A/R73A_4h:Blank_4h - mAdb ID 54946
Sample type RNA
 
Channel 1
Source name Blank_4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54946
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 4 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 4
SAMPLE: F72A/R73A_4h:Blank_4h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.579 0.670 1 1 1 748 312 124 79 1059 252 116 86 0 -0.579
1174364_1 -0.188 0.878 1 1 2 1954 621 126 80 2227 823 119 76 0 -0.188
1175152_1 0.012 1.008 1 1 3 393 250 112 76 394 191 112 61 0 0.012
1175940_1 -0.160 0.895 1 1 4 756 267 120 81 832 297 113 59 0 -0.160
1176716_1 -0.051 0.965 1 1 5 2711 851 118 78 2831 891 112 59 0 -0.051
1177504_1 0.499 1.413 1 1 6 2030 450 114 69 1486 361 114 58 0 0.499
1178580_1 -0.168 0.890 1 1 7 3008 1553 121 81 3392 1568 109 57 0 -0.168
1179356_1 -0.300 0.812 1 1 8 239 131 121 78 259 99 112 61 0 -0.300
1180144_1 0.009 1.007 1 1 9 2535 679 116 64 2538 591 106 58 0 0.009
1180932_1 -0.400 0.758 1 1 10 258 152 118 65 297 143 110 53 0 -0.400
1181708_1 0.093 1.067 1 1 11 819 344 118 71 775 366 110 57 0 0.093
1182496_1 0.260 1.197 1 1 12 287 174 119 70 248 155 106 50 0 0.260
1183572_1 0.195 1.144 1 1 13 993 363 112 65 884 282 105 46 0 0.195
1184348_1 0.134 1.097 1 1 14 353 213 108 69 333 180 107 51 0 0.134
1185136_1 0.043 1.030 1 1 15 347 141 120 83 333 173 110 51 0 0.043
1185924_1 0.187 1.138 1 1 16 285 150 114 65 253 120 101 50 0 0.187
1186700_1 0.102 1.073 1 1 17 809 369 108 65 769 261 108 47 0 0.102
1187488_1 -0.167 0.891 1 1 18 538 233 112 66 590 248 106 49 0 -0.167
1188564_1 0.052 1.037 1 1 19 3609 811 106 67 3523 762 103 49 0 0.052
1189340_1 0.145 1.106 1 1 20 733 303 109 82 674 413 103 66 0 0.145

Total number of rows: 21794

Table truncated, full table size 1478 Kbytes.




Supplementary data files not provided
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