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Sample GSM44249

Query DataSets for GSM44249

Status

Public on Apr 04, 2005

Title

DLCL 98-3607

Sample type

RNA

Source name

Diffuse large B cell lymphoma

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Diffuse large B cell lymphoma biopsy was digested and single cells suspension was frozen as viable cells. CD19 positive cells were later purified by magnetic cell separation. Targets were produced starting from 5 ug of total RNA following standard Affymetrix protocol.

Submission date

Feb 28, 2005

Last update date

May 27, 2005

Contact name

Katia Basso

E-mail(s)

kb451@columbia.edu

Phone

212-8515269

Fax

212-8515256

Organization name

Columbia University

Department

Institute for Cancer Genetics

Street address

1150 St. Nicholas Avenue

City

New York

State/province

ZIP/Postal code

10032

Country

USA

Platform ID

GPL91

Series (1)

GSE2350

Normal and transformed human mature B cells

Data table header descriptions
ID_REF	Probeset ID of Affymatrix chip
VALUE	'signal' a meature of the abundance of a transcript (obtained using GCOS1.2)
ABS_CALL	the call in an absolute analysis that indicates if the transcript was presenct(P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MurIL2_at	18.3	A	0.794268
AFFX-MurIL10_at	4.5	A	0.699394
AFFX-MurIL4_at	2.2	A	0.979978
AFFX-MurFAS_at	26.4	A	0.455413
AFFX-BioB-5_at	212.5	P	0.028457
AFFX-BioB-M_at	332.5	P	0.003212
AFFX-BioB-3_at	183.8	M	0.054213
AFFX-BioC-5_at	1341.1	P	0.000127
AFFX-BioC-3_at	1168.7	P	0.000052
AFFX-BioDn-5_at	924.9	P	0.00007
AFFX-BioDn-3_at	4722.8	P	0.000107
AFFX-CreX-5_at	9540.2	P	0.000066
AFFX-CreX-3_at	9462.6	P	0.000052
AFFX-BioB-5_st	37.7	A	0.41138
AFFX-BioB-M_st	20.9	A	0.559354
AFFX-BioB-3_st	15	A	0.949771
AFFX-BioC-5_st	7.7	A	0.921998
AFFX-BioC-3_st	3.4	A	0.852061
AFFX-BioDn-5_st	98.9	A	0.300606
AFFX-BioDn-3_st	75.5	A	0.262827

Total number of rows: 12600

Table truncated, full table size 310 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM44249.CEL.gz	3.2 Mb	(ftp)(http)	CEL
Processed data included within Sample table