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GEO accession:
Sample GSM442512
Query DataSets for GSM442512
Status
Public on Oct 09, 2009
Title
Grd, 1_hours, rep1
Sample type
RNA
Source name
Grd, 1_hours
Organism
Mus musculus
Characteristics
cell type: primary bone marrow dendritic cell
Treatment protocol
NA
Growth protocol
mouse primary BMDCs (Amit et al. 2009)
Extracted molecule
total RNA
Extraction protocol
miRNEASY (QIAGEN) as recommended by manufactor
Label
Biotin
Label protocol
Standard Affymetrix protocols for mouse ht arrays
Hybridization protocol
Standard Affymetrix protocols for mouse ht arrays
Scan protocol
Standard Affymetrix protocols for mouse ht arrays
Description
5500144052237031609409.G02
Data processing
RMA - All values lower than 20 were replaced by 20. All probesets whose values in all samples are equal or below 20 were removed.
Submission date
Aug 19, 2009
Last update date
Oct 09, 2009
Contact name
Tal Shay
Organization name
Broad Institute
Street address
7CC
City
Cambridge
State/province
MA
ZIP/Postal code
02139
Country
USA
Platform ID
GPL8759
Series (1)
GSE17721
Dendritic cell stimulation: 5 ligands, 9 time points
Data table header descriptions
ID_REF
VALUE
RMA normalized intensity for probe set
Data table
ID_REF
VALUE
1415670_at
303.7
1415671_at
1744.3
1415672_at
1413.8
1415673_at
55.4
1415674_a_at
472.2
1415675_at
289.1
1415676_a_at
1345.1
1415677_at
223.2
1415678_at
410.2
1415679_at
1115
1415680_at
325
1415681_at
392.2
1415682_at
90.2
1415683_at
1639.3
1415684_at
259.6
1415685_at
108.5
1415686_at
257
1415687_a_at
8933
1415688_at
345.9
1415689_s_at
131.7
Total number of rows:
18858
Table truncated, full table size
300 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM442512.CEL.gz
2.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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