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Sample GSM458545 Query DataSets for GSM458545
Status Public on Mar 22, 2010
Title MM472
Sample type SRA
 
Source name secondary cutaneous melanoma from a chronically sun-damaged body site
Organism Homo sapiens
Characteristics cell line: secondary cutaneous melanoma from a chronically sun-damaged body site
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) mitchelS@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018406
BioSample SAMN00010673

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 346062
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 282249
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 97385
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 56147
TACCACAGGGTAGAACCACGGACTCGTATGCCGTCT 32515
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 31255
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 27160
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 26655
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 24695
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTTTT 22486
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTCTT 18720
TGAGGTAGTAGGTTGTATAGTTTCGTATTCCGTCTT 18474
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAT 17819
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTTTT 17286
TGAGGGGCAGAGAGCGAGACTTTTCGTATGCCGTCT 17203
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 16917
AGAGGTAGTAGGTTGCATAGTTTCGTATGCCGTCTT 14618
CATTGCACTTGTCTCGGTCTGATCGTATGCCGTCTT 14590
TGAGGTAGGAGGTTGTATAGTTTCGTATGCCGTCTT 13954
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 13911

Total number of rows: 68489

Table truncated, full table size 2622 Kbytes.




Supplementary data files not provided
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