|
Status |
Public on Aug 13, 2010 |
Title |
MDG 139 - breast - non-cancer |
Sample type |
RNA |
|
|
Channel 1 |
Source name |
Biopsy from area with some mammographic density
|
Organism |
Homo sapiens |
Characteristics |
tissue: breast clinical characteristic/disease status: area with some mammographic density
|
Extracted molecule |
total RNA |
Extraction protocol |
RNeasy Mini protocol, Qiagen, Valencia, CA
|
Label |
Cy5
|
Label protocol |
Agilent Low RNA Input Fluorescent Linear Amplification Kit Protocol
|
|
|
Channel 2 |
Source name |
Universal reference
|
Organism |
Homo sapiens |
Characteristics |
reference source: Stratagene, LaJolla, CA
|
Extracted molecule |
total RNA |
Extraction protocol |
RNeasy Mini protocol, Qiagen, Valencia, CA
|
Label |
Cy3
|
Label protocol |
Agilent Low RNA Input Fluorescent Linear Amplification Kit Protocol
|
|
|
|
Hybridization protocol |
Agilent 60-mer oligo microarray processing protocol (Surehyb enables/SSPE)
|
Scan protocol |
Agilent scanner (Agilent Technologies, Santa Clara, CA)
|
Description |
061206-MDG139_251239138478_S01_GE2-SSPE_91_2.txt
|
Data processing |
Feature Extraction 9.1.3.1 software and lowess normalization was used.
|
|
|
Submission date |
Oct 21, 2009 |
Last update date |
Aug 13, 2010 |
Contact name |
Vilde Drageset Haakensen |
E-mail(s) |
vilde.drageset.haakensen@rr-research.no
|
Phone |
+47 98669297
|
Organization name |
The Norwegian Radium Hospital
|
Department |
Dept of Genetics
|
Street address |
Montebello
|
City |
Oslo |
ZIP/Postal code |
0310 |
Country |
Norway |
|
|
Platform ID |
GPL6848 |
Series (1) |
GSE18672 |
Mammographic density and genetics - A study of breast biopsies in relation to mammoraphic density |
|