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Sample GSM464399 Query DataSets for GSM464399
Status Public on Oct 22, 2009
Title unrestricted_somatic_stemcell_rep3
Sample type RNA
 
Source name Human cord blood
Organism Homo sapiens
Characteristics growth protocol: Cultured in Low Glucose DMEM, 30% FBS, 100 U/ml penicillin, 0.1 mg/ml streptomycin, 2 mM ultraglutamine, 10-7 M dexamethasone
Growth protocol Cells from 3 different donors per stem cell type were cultured under proliferative, non-differentiating conditions.
Extracted molecule total RNA
Extraction protocol Rneasy column purification
Label biotin
Label protocol GeneChip WT Terminal Labeling Kit
 
Hybridization protocol 17 hours at 45 degrees in Affymetrix hybridization oven at 60 rpm,washing and staining in Fluidics station 450 using stain cocktails: SAPE and antibody solution, (protocol FS450_0001)
Scan protocol GeneChip scanner 3000 7G
Description USSC
Data processing RMA + GC correction
 
Submission date Oct 22, 2009
Last update date Oct 22, 2009
Contact name Bastiaan Jansen
E-mail(s) bjhjansen@gmail.com
Organization name Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Center Nijmegen
Department Tumor Immunology
Street address PO Box 9101
City Nijmegen
ZIP/Postal code 6500 HB
Country Netherlands
 
Platform ID GPL5175
Series (1)
GSE18698 Functional differences among human postnatal stem cells of different origin are reflected by their transcriptome

Data table header descriptions
ID_REF
VALUE RMA log2 intensities

Data table
ID_REF VALUE
3881686 7.39748
2672712 6.1136
2842570 6.23224
3526544 3.7292
2902531 2.198
2402942 4.03209
3382216 4.78418
3771800 7.56124
2427469 5.41758
2392945 4.13429
2453006 2.90772
3552083 3.6677
3416651 2.49408
2562821 7.60285
3721851 5.09383
3442176 5.0043
2477438 4.09927
2926969 6.68
3026969 3.70089
3796335 5.47126

Total number of rows: 21980

Table truncated, full table size 341 Kbytes.




Supplementary file Size Download File type/resource
GSM464399_SKEX0807_17.CEL.gz 21.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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