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Sample GSM464645 Query DataSets for GSM464645
Status Public on Jun 28, 2011
Title KD 5mil rep2
Sample type RNA
 
Source name HeLa (5 millions) transfected with Hmgb1-shRNA plasmid, KD sample, array replica2
Organism Homo sapiens
Characteristics cell line: HeLa
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Quiagen miRneasy kit , in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description NA
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 23, 2009
Last update date Jun 28, 2011
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6947
Series (1)
GSE18721 The effects of Hmgb1 depletion on gene expression in human cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 95.3 0.78393
ILMN_2055271 116.3 0.07642
ILMN_1736007 103.4 0.35046
ILMN_2383229 101.6 0.45191
ILMN_1806310 103.9 0.32543
ILMN_1779670 95.3 0.78393
ILMN_2321282 102.3 0.40448
ILMN_1671474 96.4 0.70883
ILMN_1772582 103.4 0.35046
ILMN_1735698 128.6 0.02503
ILMN_1653355 110.9 0.13834
ILMN_1717783 96.8 0.67325
ILMN_1705025 95.3 0.78393
ILMN_1814316 104 0.32543
ILMN_2359168 86.1 0.97892
ILMN_1731507 99.8 0.52833
ILMN_1787689 107.5 0.24111
ILMN_1745607 110.6 0.13966
ILMN_2136495 95.3 0.78393
ILMN_1668111 100.9 0.47826

Total number of rows: 48797

Table truncated, full table size 1207 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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