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Sample GSM4656 Query DataSets for GSM4656
Status Public on Mar 06, 2003
Title 1st D-Spleen vs D-Liver
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Liver was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Spleen total RNA (Catalog #64044-1) was purchased from Clontech and used as the starting material. cRNA was made by the double round amplification method.
Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material. cRNA was made by the double round amplification method.
 
Submission date Mar 06, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE331 Spleen vs Liver - cDNA - Double
GSE6438 Spleen vs Liver - cDNA - Single and Double

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Raw Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 85286.1 65139.4 65517 790.741 865.259 863 24.8558 46985.6 36093.6 34347 9100.18 952.158 949 41.3478 -0.258914 0
2 272.282 1035.5 1031 52.3588 851.733 851 19.6741 302.147 1098.29 1079.5 84.7313 947.634 949 41.0015 0.0451994 0
3 40.7752 846.407 848 20.6197 858.642 859 20.5998 49.7292 949.037 942 34.0051 958.536 956 38.5092 0.0862153 0
4 150.18 910.63 908 21.7842 847.199 848 20.8752 77.1732 949.333 957 49.0384 945.037 944 36.866 -0.289144 0
5 61.9375 847.56 852 21.2408 846.547 848 26.7278 58.2012 943 927 56.0996 947.311 946 38.1858 -0.0270215 0
6 762.117 1462.23 1456 84.6552 854.709 853 25.7089 889.516 1459.58 1466 142.064 925.367 922.5 35.3669 0.0671322 0
7 45.2546 822.32 823 20.4547 840.404 840 21.7995 33.9552 886.4 881 41.0203 915.596 914 39.8239 0 0
8 76.6092 837.885 831.5 23.1678 827.472 827 21.4047 59.5827 891.115 892 39.7516 895.686 897 40.4337 -0.10916 0
9 6974.9 6621.73 6584.5 520.907 817.89 819 24.0501 5974.51 4832.73 4811 433.887 862.816 865 41.5655 -0.0672355 -0.223351496
10 728.359 1417.48 1440 221.441 825.556 824 24.2736 6459.83 5080.7 5164 1600.71 894.119 890 49.0432 0.947875 3.148772593
11 49.4539 825.75 826.5 19.8039 831.512 833 24.243 77.3729 904.071 898 54.3915 889.524 884 45.223 0.194389 0
12 46.2208 822.6 823 14.9108 832.385 833 24.2531 46.0499 874.96 885 35.0303 888.59 888 42.7349 0 0
13 71.6899 831.28 833 20.4094 822.974 825 21.6827 73.4878 892.48 893 23.4665 884.603 881.5 36.4723 0.0107574 0
14 1714.9 2259.92 2322 196.717 827.815 828 20.7855 1835.52 2044.17 2048.5 144.289 894.032 893 44.3298 0.0295201 0.09806365
15 4531.03 4687.38 2815.5 3730.67 837.174 834 24.4745 3596.84 3201.15 1845 2426.18 893.619 890 36.4537 -0.100277 0
16 2415.44 2865.29 2125.5 1140.28 833.151 832 21.4362 1371.9 1747.25 1431 501.901 904.164 902 42.3024 -0.245674 0
17 230.506 963.85 955.5 46.7842 830.099 831.5 23.3016 124.592 939.25 922 46.3532 905.487 906 40.6982 -0.267194 0
18 949.877 1595.85 1608 108.096 825.705 826 20.3436 1257.14 1674.85 1660.5 133.022 898.647 898 32.984 0.121715 0.404328478
19 4988.58 5050.89 5028 794.938 830.203 832.5 21.199 4199.29 3614.54 3653.5 546.055 895.791 893 35.5899 -0.0748015 -0.248485204
20 7082.24 6850.79 6873 693.234 835.667 835.5 19.1293 2771.78 2680.63 2682.5 231.325 910.3 913 38.0624 -0.407411 -1.353390047

Total number of rows: 16273

Table truncated, full table size 1970 Kbytes.




Supplementary data files not provided
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