NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4669 Query DataSets for GSM4669
Status Public on Mar 06, 2003
Title 3rd UMRR vs Liver
Sample type RNA
 
Channel 1
Source name UMRR (Universal Mouse Reference RNA) was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Liver was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description UMRR (Catalog #740100) was purchased from Stratagene and used as the starting material. cRNA was made by the single round amplification method.
Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material. cRNA was made by the single round amplification method.
 
Submission date Mar 06, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE333 UMRR vs Liver
GSE6437 UMRR vs Liver or Spleen

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 34545.7 37952.2 35899.5 9642.99 767.19 761 38.2865 14282 15454.7 14454 4071.84 1214.37 1214 80.62 -0.383604 0
2 242.874 968.292 973.5 66.6578 755.994 750 32.0523 146.391 1311.96 1313.5 98.1323 1194.81 1199 71.423 -0.219868 0
3 50.9602 765.115 749.5 48.5068 748.367 744 34.1185 51.9555 1178 1176.5 56.5947 1175.87 1174 83.6165 0 0
4 385.473 822.25 820.5 36.5702 734.867 732 26.0978 16.6257 1076.54 1074.5 66.8134 1128.06 1122 65.9727 -1.36522 0
5 52.4602 756.12 742 40.3313 741.353 740 27.0094 35.4015 1134.36 1127 58.2444 1157.48 1153 62.4264 -0.170808 0
6 671.257 1432.39 1416 91.6891 761.327 757 31.8272 635.912 1788.13 1797 125.121 1169.67 1157 70.1052 -0.0234921 0
7 77.4262 788.769 783 56.5921 750.55 746 30.148 46.6338 1165.31 1157.5 65.2348 1159.97 1149 70.0899 -0.220187 0
8 131.069 745.192 737 23.1552 755.974 753 35.5904 17.8058 1112.04 1117 47.4759 1177.81 1177 70.6558 0 0
9 2764.07 3678.88 3675.5 215.385 757.013 754 33.6419 2082.9 3235.58 3202 167.617 1174.66 1168 74.1858 -0.12288 -0.408198524
10 1050.02 1808.83 1672.5 439.015 748.27 747 29.0514 1440.94 2615.13 2483 786.606 1152.32 1144.5 70.6448 0.137449 0
11 43.6259 733.364 736 22.2615 736.653 734 26.8643 40.2493 1173.09 1168.5 46.094 1158.03 1151 70.4281 0 0
12 38.5478 743.885 731 33.116 736.059 736 25.0413 43.0043 1175.31 1161.5 75.168 1168.5 1167 71.1244 0 0
13 96.3796 704.955 699.5 25.9697 729.676 728.5 26.1709 15.2028 1134.23 1127.5 41.2217 1161.16 1160.5 60.3264 0 0
14 663.122 1389.68 1215 480.54 728.742 726 28.129 823.837 1942.5 1746 527.931 1124.3 1117 84.0618 0.0942476 0
15 3426.58 4442.75 2902.5 3611.05 719.047 719 24.0077 4406.56 5362.29 3887.5 3814.5 1062.99 1061 54.1978 0.109239 0
16 1489.12 2223.82 2475.5 769.829 716.048 713.5 27.8053 833.584 1902.71 1946.5 451.422 1075.42 1072 71.465 -0.25198 0
17 282.744 977.952 936 141.37 723.182 718.5 30.0297 161.921 1228.81 1201 144.579 1097.21 1087 83.4484 -0.24209 0
18 642.286 1367.65 1370 114.169 725.856 721 29.1869 639 1755.26 1749 136.241 1134.01 1124 85.1053 -0.00222732 -0.007398997
19 7627.55 9038.86 9183 1428.96 724.221 718 33.1347 6552.38 7552.79 7922.5 1084.69 1139.17 1135 83.7526 -0.0659862 -0.219201412
20 4750.4 5876.38 5797 476.651 708.092 705 29.48 3148.58 4159.54 4147.5 334.069 1101.37 1090 71.158 -0.178615 -0.593346187

Total number of rows: 16273

Table truncated, full table size 1967 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap