NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM49576 Query DataSets for GSM49576
Status Public on Jun 01, 2005
Title MPM tumor 13
Sample type RNA
 
Source name MPM tumor specimen 13
Organism Homo sapiens
Extracted molecule total RNA
 
Description Discarded MPM surgical specimens (n=40), normal pleura specimens (n=5), and normal lung specimens (n=4) were freshly collected (and snap frozen) from patients who underwent surgery at Boston’s Brigham and Women’s Hospital (BWH) between October 1998 and August 2000. All of these patients underwent extrapleural pneumonectomy with heated intra-pleural cisplatin chemotherapy delivered after the specimens were removed. All normal specimens were obtained from patients who were never diagnosed with MPM. Two human MPM cell lines (MS589 and MS428) were kindly provided by Jonathan A. Fletcher, M.D., Department of Pathology, BWH. The JMN1B MPM cell line19,20 has been described previously. The SV40-immortalized, non-tumorigenic mesothelial cell line (Met-5A)21 and the MPM cell line MSTO-211H22 were purchased from the American Type Culture Collection. Normal tissues were obtained from additional consented patients undergoing treatment for diseases other than MPM. All MPM samples used in these studies contained relatively pure tumor (greater than 50% tumor cells per high power field examined in a section adjacent to the tissue used). The microscopic slides from the patients’ resection specimens were reviewed by one of the authors (J.G.), and the diagnosis and histologic subclassification of MPM confirmed in all cases. Linked clinical and pathological data were obtained for all patients who contributed tumor specimens. Specimens and data were rendered anonymous to protect patient confidentiality. Studies utilizing human tissues were approved by and conducted in accordance with the policies of the Institutional Review Board at BWH.
 
Submission date Apr 26, 2005
Last update date Oct 28, 2005
Contact name Gavin Gordon
E-mail(s) ggordon@partners.org
Phone 617-732-6526
Organization name Brigham and Women's Hospital/Harvard Medical School
Street address
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL96
Series (1)
GSE2549 Malignant pleural mesothelioma

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 464.9 P 0.002023
AFFX-BioB-M_at 830.8 P 0.000044
AFFX-BioB-3_at 367.5 P 0.000044
AFFX-BioC-5_at 1242.7 P 0.00006
AFFX-BioC-3_at 1104.3 P 0.000044
AFFX-BioDn-5_at 1297.2 P 0.000044
AFFX-BioDn-3_at 5211.1 P 0.000044
AFFX-CreX-5_at 12264.4 P 0.000044
AFFX-CreX-3_at 16370.1 P 0.000044
AFFX-DapX-5_at 7.3 A 0.340661
AFFX-DapX-M_at 27 A 0.175328
AFFX-DapX-3_at 8.1 A 0.860518
AFFX-LysX-5_at 2.4 A 0.659339
AFFX-LysX-M_at 27.7 A 0.58862
AFFX-LysX-3_at 20.6 A 0.340661
AFFX-PheX-5_at 1.8 A 0.921998
AFFX-PheX-M_at 1.1 A 0.941556
AFFX-PheX-3_at 34.4 A 0.327079
AFFX-ThrX-5_at 4.5 A 0.860518
AFFX-ThrX-M_at 26.8 A 0.354453

Total number of rows: 22283

Table truncated, full table size 580 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap