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Status |
Public on Feb 27, 2021 |
Title |
miR-100_4 |
Sample type |
RNA |
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Source name |
global microRNA-100 overexpressing mice
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Organism |
Mus musculus |
Characteristics |
strain background: C57BL/6J genotype: global miR-100 overexpression using CMV-Cre deleter ( Tg(CMV-cre)1Cgn/J) crossed to miR-100flox/flox, both on C57BL/6J background, Cre positive miR100flox/+ were selected and backcrossed to eliminate the Cre transgene and then further crossed to homozygosity age: 6 months Sex: male tissue: liver treatment: untreated
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Treatment protocol |
Samples from male, 6 months old, untreated mice were used.
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Growth protocol |
All mice were kept under a 12h/12h light/dark cycle in a specific pathogen-free animal facility with standard diet and water available ad libitum.
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Extracted molecule |
total RNA |
Extraction protocol |
TriPure extraction of total RNA was performed according to the manufacturer's instructions.
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Label |
biotin
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Label protocol |
We used the Affymetrix WT Plus kit for cDNA synthesis, amplification, and second-cycle cDNA synthesis, as well as fragmentation and labeling with Biotin, as described by the manufacturer.
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Hybridization protocol |
Labeled fragments were hybridized to Affymetrix Mouse Gene 2.0 ST arrays for 16h at 45°C with 60 rpm in an Affymetrix Hybridization oven 645. Arrays were washed and stained using the Affymetrix wash and stain kit as described by the manufacturer.
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Scan protocol |
The arrays were scanned with the Affymetrix GeneChip Scanner 3000 7G.
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Description |
Gene expression data from male, 6 months old, untreated mice
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Data processing |
CEL-files were produced from the raw data with Affymetrix GeneChip Command Console Software Version 4.0 and standard settings. CEL-files were processed with Partek Genomics Suite software using standard settings with Anova.
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Submission date |
Feb 26, 2021 |
Last update date |
Feb 27, 2021 |
Contact name |
Christian Smolka |
E-mail(s) |
christian.smolka@uniklinik-freiburg.de
|
Phone |
+4976127070460
|
Organization name |
Heart Center Freiburg University
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Department |
Department of Cardiology and Angiology I
|
Lab |
AG Grundmann
|
Street address |
Breisacher Strasse 33
|
City |
Freiburg |
State/province |
Baden Württemberg |
ZIP/Postal code |
79106 |
Country |
Germany |
|
|
Platform ID |
GPL16570 |
Series (1) |
GSE167603 |
Expression data from global miR-100 overexpressing mice |
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