|
| Status |
Public on Sep 14, 2010 |
| Title |
Primary medulloblastoma MDT-MB-136 |
| Sample type |
RNA |
| |
|
| Source name |
Primary medulloblastoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Primary medulloblastoma
age: 1.4
gender: F
histological subtype: Desmoplastic
molecular subgroup: SHH
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol method as directed by the manufacturer.
|
| Label |
biotin
|
| Label protocol |
As directed by the manufacturer.
|
| |
|
| Hybridization protocol |
As directed by the manufacturer.
|
| Scan protocol |
As directed by the manufacturer.
|
| Data processing |
Affymetrix CEL files were imported into Affymetrix Expression Console (Version 1.1) and gene-level analysis (CORE content) was performed. Arrays were quantile normalized (sketch) and summarized using PLIER with PM-GCBG background correction.
probe group file: HuEx-1_0-st-v2.r2.pgf
meta-probeset file: HuEx-1_0-st-v2.r2.dt1.hg18.core.mps
|
| |
|
| Submission date |
Mar 30, 2010 |
| Last update date |
Jan 08, 2019 |
| Contact name |
Paul A. Northcott |
| E-mail(s) |
panorthcott@gmail.com
|
| Organization name |
German Cancer Research Center (DKFZ)
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
HEIDELBERG |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL5175 |
| Series (1) |
| GSE21140 |
Genomics of medulloblastoma identifies four distinct molecular variants |
|
| Relations |
| Reanalyzed by |
GSM529809 |
| Reanalyzed by |
GSE124814 |
