|
Status |
Public on Sep 14, 2010 |
Title |
Primary medulloblastoma MDT-MB-195 |
Sample type |
RNA |
|
|
Source name |
Primary medulloblastoma
|
Organism |
Homo sapiens |
Characteristics |
tissue: Primary medulloblastoma age: 1.9 gender: F histological subtype: Classic molecular subgroup: SHH
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol method as directed by the manufacturer.
|
Label |
biotin
|
Label protocol |
As directed by the manufacturer.
|
|
|
Hybridization protocol |
As directed by the manufacturer.
|
Scan protocol |
As directed by the manufacturer.
|
Data processing |
Affymetrix CEL files were imported into Affymetrix Expression Console (Version 1.1) and gene-level analysis (CORE content) was performed. Arrays were quantile normalized (sketch) and summarized using PLIER with PM-GCBG background correction. probe group file: HuEx-1_0-st-v2.r2.pgf meta-probeset file: HuEx-1_0-st-v2.r2.dt1.hg18.core.mps
|
|
|
Submission date |
Mar 30, 2010 |
Last update date |
Jan 08, 2019 |
Contact name |
Paul A. Northcott |
E-mail(s) |
panorthcott@gmail.com
|
Organization name |
German Cancer Research Center (DKFZ)
|
Street address |
Im Neuenheimer Feld 280
|
City |
HEIDELBERG |
ZIP/Postal code |
69120 |
Country |
Germany |
|
|
Platform ID |
GPL5175 |
Series (1) |
GSE21140 |
Genomics of medulloblastoma identifies four distinct molecular variants |
|
Relations |
Reanalyzed by |
GSM529854 |
Reanalyzed by |
GSE124814 |