|
| Status |
Public on Oct 20, 2021 |
| Title |
PATIENT21 |
| Sample type |
RNA |
| |
|
| Source name |
PBC
|
| Organism |
Homo sapiens |
| Characteristics |
condition: systemic sclerosis patient
gender: Female
age: 65.201916495551
race: Caucasian
disease duration: 10.14099932
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Whole blood was extracted from PAXgene Tubes. RNA quality was checked with Agilent Bioanalyser.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Data processing |
Data were quantile-quantile normalized and restricted to the overlap between probes mapped to Entrez Gene (by “re-annotated” mapping in Bioconductor package illuminaHumanv4.db) and those with average detection p-value equal to or below 0.01.
|
| |
|
| Submission date |
Jun 29, 2021 |
| Last update date |
Oct 20, 2021 |
| Contact name |
Shervin Assassi |
| E-mail(s) |
shervin.assassi@uth.tmc.edu
|
| Organization name |
The University of Texas Health Science Center at Houston
|
| Department |
Division of Rheumatology
|
| Street address |
6431 Fannin
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL10558 |
| Series (1) |
| GSE179153 |
Multiomic study of skin/peripheral blood cell transcriptome and serum proteins: Is serum proteome a reflection of disease process at the end-organ level in systemic sclerosis? |
|
