|
Status |
Public on Oct 20, 2021 |
Title |
SAMPLE071 |
Sample type |
RNA |
|
|
Source name |
PBC
|
Organism |
Homo sapiens |
Characteristics |
condition: Control gender: Female age: 49.9822039698836 race: African American
|
Extracted molecule |
total RNA |
Extraction protocol |
Whole blood was extracted from PAXgene Tubes. RNA quality was checked with Agilent Bioanalyser.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Data processing |
Data were quantile-quantile normalized and restricted to the overlap between probes mapped to Entrez Gene (by “re-annotated” mapping in Bioconductor package illuminaHumanv4.db) and those with average detection p-value equal to or below 0.01.
|
|
|
Submission date |
Jun 29, 2021 |
Last update date |
Oct 20, 2021 |
Contact name |
Shervin Assassi |
E-mail(s) |
shervin.assassi@uth.tmc.edu
|
Organization name |
The University of Texas Health Science Center at Houston
|
Department |
Division of Rheumatology
|
Street address |
6431 Fannin
|
City |
Houston |
State/province |
TX |
ZIP/Postal code |
77030 |
Country |
USA |
|
|
Platform ID |
GPL10558 |
Series (1) |
GSE179153 |
Multiomic study of skin/peripheral blood cell transcriptome and serum proteins: Is serum proteome a reflection of disease process at the end-organ level in systemic sclerosis? |
|