NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM5476 Query DataSets for GSM5476
Status Public on Apr 05, 2003
Title Spleen vs Bombesin Treated B cell 30min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Bombesin Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Bombesin for 30min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE374 Spleen vs Bombesin Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.21446 16117 9836.13 36670.3 20687.2 31680 16760 13581.3 9794.49 750.622 818.801 748.5 821 28.6639 43.7359 0
2 -0.511322 166.136 51.1848 857.96 848.2 857 845 35.6107 36.573 742.675 825.191 743 823 29.8956 50.0816 0
3 -0.31049 115.077 56.2987 773.333 865.111 767 865 46.0309 42.6094 732.848 828.026 730 824 35.1804 50.9789 0
4 -0.618381 142.631 34.3427 813.435 803.435 817 809 24.7273 43.9988 727.748 809.156 727 812 30.8214 56.0063 0
5 -0.197959 91.3667 57.92 734.28 871.64 732 875 20.8137 42.386 738.11 851.721 736.5 853 33.8819 56.0887 0
6 -0.368049 323.496 138.618 1152.82 1066.39 1151 1074.5 64.7222 67.8895 761.664 841.919 759 839 34.8368 45.8852 0
7 -0.390711 118.594 48.2339 777.615 842.846 766.5 845.5 43.8051 44.8764 760.84 840.667 753.5 839.5 40.1036 50.1548 0
8 -0.375216 98.6518 41.5805 743.538 825.769 735 830 29.3561 32.2767 751.231 828.808 745.5 835.5 32.5731 51.793 -1.246440572
9 0.128003 1907.77 2561.7 4765.29 6028.46 4737.5 6009.5 206.123 281.487 778.283 876.189 774 867 37.1334 68.0958 0.425216762
10 0.218171 873.54 1443.62 2352.77 3959.5 2255.5 3946 465.611 961.667 780.459 947.083 784 945 36.3744 68.632 0.724748374
11 -0.126776 109.7 81.928 768 934.667 761.5 953 38.2748 63.3079 773.691 932.114 768 925 40.4248 69.5919 -0.421140756
12 -0.260559 124.91 68.5547 791.923 897.385 794 883 36.5666 62.5972 790.209 921.02 788 912 42.4508 58.2586 -0.865558262
13 -0.107915 118.935 92.7671 785.083 962.292 784 959.5 32.8619 61.9582 805.378 978.473 805 977.5 46.1453 62.603 -0.35848587
14 0.00892294 544.545 555.849 1581.79 2093.21 1593 2080 102.727 183.489 780.076 921.028 778.5 923.5 37.9414 66.3623 0.029641365
15 -0.1576 436.928 303.956 1371.68 1477.26 1148 1232 627.035 585.166 785.507 914.651 781.5 914.5 36.4664 54.6805 0
16 0.0645566 1032.57 1198.05 2670.22 3409.7 2317 2964 970.926 1273.5 790.652 960.114 788.5 956 39.2949 61.583 0
17 -0.587347 1135.89 293.757 2666.91 1434.27 2396.5 1392 964.804 265.314 775.66 944.388 768 946 45.9998 66.002 0
18 -0.033276 256.167 237.272 1040.5 1318.75 1042.5 1305.5 46.0495 70.0934 765.56 905.698 763 903 38.5164 65.2597 -0.110540479
19 0.326469 2442.18 5179.01 6060.27 11221.8 6066 11159.5 1151.26 2101.21 784.098 915.667 780 909 38.3239 54.725 1.084506543
20 -0.2687 4036.08 2174.01 9575.91 5144.86 9595.5 5242 889.122 477.726 800.966 932.876 796 923 39.9577 60.1224 -0.892602079

Total number of rows: 16273

Table truncated, full table size 1987 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap