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Sample GSM5663 Query DataSets for GSM5663
Status Public on Apr 05, 2003
Title Spleen vs Lipopolysaccharide (LPS) Treated B cell 30min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Lipopolysaccharide (LPS) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Lipopolysaccharide (LPS) for 30min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE389 Spleen vs Lipopolysaccharide (LPS) Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.220266 35838.9 21581.8 65516.8 35201.6 65517 33698 0.622466 10342.1 767.635 1213.72 765 1210 39.4042 82.0331 0
2 -0.0759365 165.805 139.207 970.087 1393.26 966 1417 30.4988 81.787 754.419 1182.06 755 1194 38.8097 76.9339 0
3 0.153701 53.6431 76.4213 775.24 1243.76 766 1261 47.6211 91.0747 733.288 1141.07 731 1142.5 37.7718 71.3918 0
4 -0.382445 84.2184 34.911 800.583 1107.54 792 1130.5 37.2768 152.705 719.084 1105.23 712 1101.5 35.6624 73.3368 0
5 -0.0073308 40.875 40.1909 740.259 1110.96 738 1090 38.2307 103.605 718.358 1079 717 1081 34.6893 79.2156 0
6 -0.0185853 438.717 420.338 1404.85 1724.04 1404.5 1728 89.8896 192.52 716.497 1048.61 714 1046 35.2382 83.0293 0
7 0.20975 47.0321 76.2331 726.48 1109.52 713 1111 49.2105 64.5162 694.12 1006.31 696.5 1000.5 30.8088 67.6392 0
8 0.00146757 27.2143 27.3065 698.56 976.44 699 985 40.9299 67.5784 696.232 969.79 696.5 970 29.5739 57.0514 0
9 0.0333529 4570.1 4934.91 9217.87 8418.48 9077 8018 771.916 1745.71 716.691 937.303 711 933.5 31.988 68.5498 0.110795936
10 0.35034 748.148 1676.2 1963.68 3616.48 1714 3138 556.009 1474.27 698.865 914.723 696 916 37.4998 64.6687 0
11 -0.697318 117.68 23.6257 776.727 760.636 773.5 753 38.6968 85.5868 697.033 920.854 697 905 29.9439 70.4612 0
12 -0.0271097 35.3064 33.1699 697.292 952.25 695 961 32.5128 72.8603 683.832 942.385 682 948 28.3024 72.1694 0
13 0 26.4023 30.1639 679.889 970.074 679 976 28.2902 72.3107 679.071 977.039 677 974 29.7254 67.529 0
14 0.30368 740.995 1491.06 1919.04 3386.35 1911 3404 173.683 347.727 671.256 980.077 667.5 976 32.8388 74.6725 1.008803124
15 0.388636 2063.13 5048.51 4450.28 8699 2271 4676 3611.22 6973.04 669.389 965.764 664 964.5 33.4625 72.3086 0
16 0.360673 1219.86 2798.88 2836.11 5354.67 2736 5433 755.987 1321.79 677.301 966.609 677 964 33.5391 72.3303 1.198129772
17 -0.335527 977.89 451.61 2308.22 1643.87 1888 1506 1038.08 332.725 687.717 935.934 686 923.5 29.6157 67.1503 0
18 0.151655 412.896 585.459 1344.32 1868.04 1357 1876 115.587 132.69 690.681 917.65 688 911 29.5402 59.9288 0.503787005
19 0.531887 4374.29 14886.6 8948.82 23248.5 8971.5 24063.5 786.933 4356.44 695.399 896.007 692 893 28.8589 52.3334 1.766890369
20 -0.253869 4689.77 2613.86 9371.07 4844.59 9153 4758 1017.01 712.824 713.012 876.716 709.5 874.5 32.4552 56.5392 -0.843334564

Total number of rows: 16273

Table truncated, full table size 1972 Kbytes.




Supplementary data files not provided
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