|
Status |
Public on Sep 01, 2011 |
Title |
Normal oral tissue_052CN |
Sample type |
RNA |
|
|
Source name |
Normal oral tissue
|
Organism |
Homo sapiens |
Characteristics |
disease state: normal
|
Treatment protocol |
OSCC tissues were surgical dissected and immediately froze in liquid nitrogen until use
|
Growth protocol |
None
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated from tissue using the Qiagen RNeasy Mini Kit (Qiagen, Germantown, MD, USA) according to the manufacturer’s protocol.
|
Label |
biotin
|
Label protocol |
As per manufacturer (Affymetrix)
|
|
|
Hybridization protocol |
As per manufacturer (Affymetrix)
|
Scan protocol |
Affymetrix Gene ChIP Scanner 3000
|
Description |
normal person
|
Data processing |
Data were processed using Partek software. Gene level expression were summarized from the corrected intensities and then quantile normalized. probe group file: HuEx-1_0-st-v2.r2.pgf meta-probeset file: HuEx-1_0-st-v2.r2.dt1.hg18.core.mps
|
|
|
Submission date |
Nov 03, 2010 |
Last update date |
Sep 01, 2011 |
Contact name |
Chien-Hua Peng |
Organization name |
Chang Gung Memorial Hospital
|
Street address |
No. 5, Fu-Hsing ST.
|
City |
Taoyuan |
ZIP/Postal code |
33305 |
Country |
Taiwan |
|
|
Platform ID |
GPL5175 |
Series (2) |
GSE25099 |
Expression data from 57 patients with oral cancer and 22 normal persons |
GSE25104 |
Expression and SNP array data for oral squamous cell carcinoma |
|