|
| Status |
Public on Jun 19, 2023 |
| Title |
Chronic Beryllium Disease 5 |
| Sample type |
RNA |
| |
|
| Source name |
Bronchoalveolar lavage cells from: Chronic Beryllium Disease 5
|
| Organism |
Homo sapiens |
| Characteristics |
diagnosis: CBD
Sex: M
age: 71
race: White
hispanic: No
smoker: Former
current_medications: NA
tlc: 5.9
tlc_percent_predicted: 106
fvc: 3.6
fvc_percent_predicted: 95
fev1: 2.7
fev1_percent_predicted: 97
fev1/fvc: 75
dlco: 9.91
dlco_percent_predicted: 35
bal_cellspermillion: 10.2
white_blood_cell_count (x 10^6): 40.6
macrophage_percentage: 72.8
lymphocyte_percentage: 26
slide: 257236317468
|
| Treatment protocol |
N/A
|
| Growth protocol |
Cells were stored in RLT buffer at –80°C
|
| Extracted molecule |
total RNA |
| Extraction protocol |
genomic DNA and RNA were extracted using Qiagen AllPrep DNA/RNA extraction mini kit
|
| Label |
Cy3
|
| Label protocol |
per Manufacturer Instructions
|
| |
|
| Hybridization protocol |
per Manufacturer Instructions
|
| Scan protocol |
per Manufacturer Instructions
|
| Description |
N/A
|
| Data processing |
normal-exponential background correction followed by quantile normalization implemented in the limma R package
|
| |
|
| Submission date |
Jun 22, 2022 |
| Last update date |
Jun 20, 2023 |
| Contact name |
Ivana Yang |
| E-mail(s) |
ivana.yang@cuanschutz.edu
|
| Organization name |
University of Colorado - Anschutz Medical Campus
|
| Street address |
12700 E 19th Ave
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platform ID |
GPL21185 |
| Series (2) |
| GSE206715 |
Multi-omic signatures of Chronic Beryllium Disease bronchoalveolar lavage cells relate to T cell function and innate immunity [Expression] |
| GSE206719 |
Multi-omic signatures of Chronic Beryllium Disease bronchoalveolar lavage cells relate to T cell function and innate immunity |
|
