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GEO accession:
Sample GSM62697
Query DataSets for GSM62697
Status
Public on Jun 30, 2005
Title
Columbia_stem
Sample type
RNA
Source name
stem
Organism
Arabidopsis thaliana
Characteristics
stem, approximately 0.5 cm of stem tissue immediately below the inflorescence
Treatment protocol
untreated
Growth protocol
Plants were grown under long day conditions for 6 weeks
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from frozen tissue using TRIzol reagent (Invitrogen)
Label
biotin
Label protocol
Approximately 7 µg of total RNA was processed to produce biotinylated cRNA targets.
Description
Columbia stem, approximately 0.5 cm of stem tissue immediately below the inflorescence
Data processing
Affymetrix GeneChip Microarray Suite version 5.0
Submission date
Jun 28, 2005
Last update date
Aug 28, 2018
Contact name
Christine Ellis
Organization name
University of North Carolina at Chapel Hill
Street address
121 Coker Hall
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599-3280
Country
USA
Platform ID
GPL198
Series (1)
GSE2848
Auxin Response Factor mediated flower gene expression
Relations
Reanalyzed by
GSE118579
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
raw signal level
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
241.2
P
0.00844
AFFX-BioB-M_at
268.5
P
0.000081
AFFX-BioB-3_at
227.3
P
0.00034
AFFX-BioC-5_at
646.8
P
0.000127
AFFX-BioC-3_at
318
P
0.000446
AFFX-BioDn-5_at
451
P
0.00007
AFFX-BioDn-3_at
2468.8
P
0.000052
AFFX-CreX-5_at
5230.2
P
0.000044
AFFX-CreX-3_at
8936
P
0.000044
AFFX-DapX-5_at
20.1
A
0.455413
AFFX-DapX-M_at
14.7
A
0.354453
AFFX-DapX-3_at
7.5
A
0.916408
AFFX-LysX-5_at
7.4
A
0.559354
AFFX-LysX-M_at
6.1
A
0.916408
AFFX-LysX-3_at
7.1
A
0.5
AFFX-PheX-5_at
8.1
A
0.904333
AFFX-PheX-M_at
7.4
A
0.760937
AFFX-PheX-3_at
7.4
A
0.891021
AFFX-ThrX-5_at
11.8
A
0.559354
AFFX-ThrX-M_at
19.1
A
0.631562
Total number of rows:
22810
Table truncated, full table size
589 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62697.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
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