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Sample GSM651471 Query DataSets for GSM651471
Status Public on Mar 15, 2011
Title BXA24/PgnJ_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: BXA24/PgnJ
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXA24/PgnJ_hippo_pval

Data table
ID_REF VALUE BXA24/PgnJ_hippo_pval
ILMN_1248788 129.8218 0.716792
ILMN_2707227 170.0395 0.08270676
ILMN_2896528 4565.83 0
ILMN_2721178 994.8578 0
ILMN_1227723 380.7877 0
ILMN_3033922 1267.91 0
ILMN_3092673 4984.994 0
ILMN_2730714 3342.454 0
ILMN_3162224 2035.774 0
ILMN_2816356 184.9195 0.02882206
ILMN_2808939 1274.415 0
ILMN_2634564 570.596 0
ILMN_1216623 615.0074 0
ILMN_1215157 704.1881 0
ILMN_1228777 119.1028 0.9448621
ILMN_2737647 153.1879 0.216792
ILMN_1216425 124.9548 0.8383459
ILMN_2734484 686.5269 0
ILMN_2652961 134.3204 0.6077694
ILMN_2952292 160.8111 0.1340852

Total number of rows: 25697

Table truncated, full table size 734 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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