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Sample GSM66252 Query DataSets for GSM66252
Status Public on Jan 01, 2006
Title Saccharomyces cerevisiae EM93 SWM EM93 NS24 Array_B
Sample type RNA
 
Channel 1
Source name Saccharomyces cerevisiae EM93 in SWM
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae EM93 in SWM
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy5
Label protocol See Townsend, Cavalieri and Hartl 2003
 
Channel 2
Source name Saccharomyces cerevisiae EM93 in NS24
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae EM93 in NS24
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy3
Label protocol See Townsend, Cavalieri and Hartl 2003
 
 
Scan protocol
Description Some hybridizations were performed in duplicates on the same microarrays. Two complete sets of PCR products were printed on the same glass slide and under a single cover slip. These duplicates are labeled Array_A and Array_B. Since these are not complete technical replicates, they were averaged in Landry et al. (Gene, accepted) following the normalization and prior to statistical analysis. Replicate indicates a complete independent hybridization.
Data processing Spots of bad quality were given negative flags. Nonnormalized ratios are provided.
 
Submission date Jul 27, 2005
Last update date Jul 28, 2005
Contact name Duccio Cavalieri
E-mail(s) duccio.cavalieri@unifi.it
Phone 39.055.4271327
Fax 39.055.4271280
Organization name University of Florence
Department Department of Pharmacology
Street address Viale Pieraccini 6
City Florence
ZIP/Postal code 50139
Country Italy
 
Platform ID GPL2682
Series (1)
GSE3021 Six diploid strains grown in four conditions

Data table header descriptions
ID_REF Platform ID
VALUE log ratio of median F635 divided by F532
F635 Median
B635 Median
F532 Median
B532 Median
Flags zero signififies pass, less than zero is a bad spot

Data table
ID_REF VALUE F635 Median B635 Median F532 Median B532 Median Flags
1 -1.06 138 55 287 58 0
2 -1.96 193 62 749 76 0
3 -0.22 2792 54 3242 61 0
4 -1.34 305 60 773 76 0
5 -4.02 1370 60 22175 88 0
6 0.08 508 63 479 80 0
7 -2.23 230 57 1079 69 0
8 -1.36 179 62 458 76 0
9 -0.43 142 53 191 53 0
10 -0.61 211 72 323 70 0
11 -0.80 735 50 1280 55 0
12 -1.16 201 71 449 69 0
13 -1.50 163 52 460 57 0
14 -1.34 167 72 424 71 0
15 -2.16 320 52 1426 59 0
16 -1.76 314 75 1060 71 0
17 0.46 169 55 123 59 0
18 -1.05 359 62 741 77 0
19 -0.19 333 56 381 61 0
20 -1.63 265 63 823 76 0

Total number of rows: 6218

Table truncated, full table size 164 Kbytes.




Supplementary data files not provided

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