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Sample GSM66284 Query DataSets for GSM66284
Status Public on Jan 01, 2006
Title Saccharomyces cerevisiae Sg60 SWM Sg60 NS24 Array_B
Sample type RNA
 
Channel 1
Source name Saccharomyces cerevisiae Sg60 in SWM
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae Sg60 in SWM
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy5
Label protocol See Townsend, Cavalieri and Hartl 2003
 
Channel 2
Source name Saccharomyces cerevisiae Sg60 in NS24
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae Sg60 in NS24
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy3
Label protocol See Townsend, Cavalieri and Hartl 2003
 
 
Scan protocol
Description Some hybridizations were performed in duplicates on the same microarrays. Two complete sets of PCR products were printed on the same glass slide and under a single cover slip. These duplicates are labeled Array_A and Array_B. Since these are not complete technical replicates, they were averaged in Landry et al. (Gene, accepted) following the normalization and prior to statistical analysis. Replicate indicates a complete independent hybridization.
Data processing Spots of bad quality were given negative flags. Nonnormalized ratios are provided.
 
Submission date Jul 27, 2005
Last update date Jul 28, 2005
Contact name Duccio Cavalieri
E-mail(s) duccio.cavalieri@unifi.it
Phone 39.055.4271327
Fax 39.055.4271280
Organization name University of Florence
Department Department of Pharmacology
Street address Viale Pieraccini 6
City Florence
ZIP/Postal code 50139
Country Italy
 
Platform ID GPL2682
Series (1)
GSE3021 Six diploid strains grown in four conditions

Data table header descriptions
ID_REF Platform ID
VALUE log ratio of median F635 divided by F532
F635 Median
B635 Median
F532 Median
B532 Median
Flags zero signififies pass, less than zero is a bad spot

Data table
ID_REF VALUE F635 Median B635 Median F532 Median B532 Median Flags
1 -1.76 183 65 619 62 0
2 -2.78 181 59 1245 75 0
3 -0.55 4496 54 6590 59 0
4 -1.81 323 61 1134 74 0
5 -2.67 1458 55 9277 76 0
6 0.53 616 63 428 75 0
7 -2.26 205 55 981 68 0
8 -1.50 198 64 559 76 0
9 -1.93 236 79 898 65 0
10 -1.73 178 57 590 71 0
11 -0.43 804 60 1085 59 0
12 -1.98 153 58 604 66 0
13 -1.86 229 52 830 62 0
14 -1.23 217 61 508 70 0
15 -2.05 400 50 1653 61 0
16 -2.16 228 60 1020 71 0
17 0.34 160 61 126 61 0
18 -2.19 276 55 1260 75 0
19 -1.53 213 55 617 59 0
20 -1.69 333 60 1071 72 0

Total number of rows: 6218

Table truncated, full table size 165 Kbytes.




Supplementary data files not provided

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