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Sample GSM66286 Query DataSets for GSM66286
Status Public on Jan 01, 2006
Title Saccharomyces cerevisiae Sg60 SWM Sg60 NS4 Array_B
Sample type RNA
 
Channel 1
Source name Saccharomyces cerevisiae Sg60 in SWM
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae Sg60 in SWM
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy5
Label protocol See Townsend, Cavalieri and Hartl 2003
 
Channel 2
Source name Saccharomyces cerevisiae Sg60 in NS4
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae Sg60 in NS4
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy3
Label protocol See Townsend, Cavalieri and Hartl 2003
 
 
Scan protocol
Description Some hybridizations were performed in duplicates on the same microarrays. Two complete sets of PCR products were printed on the same glass slide and under a single cover slip. These duplicates are labeled Array_A and Array_B. Since these are not complete technical replicates, they were averaged in Landry et al. (Gene, accepted) following the normalization and prior to statistical analysis. Replicate indicates a complete independent hybridization.
Data processing Spots of bad quality were given negative flags. Nonnormalized ratios are provided.
 
Submission date Jul 27, 2005
Last update date Jul 28, 2005
Contact name Duccio Cavalieri
E-mail(s) duccio.cavalieri@unifi.it
Phone 39.055.4271327
Fax 39.055.4271280
Organization name University of Florence
Department Department of Pharmacology
Street address Viale Pieraccini 6
City Florence
ZIP/Postal code 50139
Country Italy
 
Platform ID GPL2682
Series (1)
GSE3021 Six diploid strains grown in four conditions

Data table header descriptions
ID_REF Platform ID
VALUE log ratio of median F635 divided by F532
F635 Median
B635 Median
F532 Median
B532 Median
Flags zero signififies pass, less than zero is a bad spot

Data table
ID_REF VALUE F635 Median B635 Median F532 Median B532 Median Flags
1 -0.78 148 41 255 128 0
2 -0.42 186 88 248 156 0
3 2.36 1373 43 268 137 0
4 0.43 300 87 222 153 0
5 1.84 2390 47 669 142 0
6 0.17 260 103 231 150 0
7 -1.14 113 52 249 145 0
8 -0.44 175 95 238 147 0
9 -1.68 75 39 241 120 0
10 -1.28 101 53 245 146 0
11 0.45 309 42 226 120 0
12 -0.67 139 53 221 140 0
13 -0.77 120 43 205 125 0
14 -0.53 166 55 240 140 0
15 -0.06 221 46 230 127 0
16 0.53 323 49 224 132 0
17 -2.05 56 40 232 129 0
18 -0.27 248 99 299 166 0
19 -1.65 80 44 251 137 0
20 0.72 354 102 215 156 0

Total number of rows: 6218

Table truncated, full table size 166 Kbytes.




Supplementary data files not provided

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